PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10003492 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 24924 Da PI: 7.4068 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.5e-18 | 20 | 73 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t+eq+++Le+ F n+++ e + eLA++lg++ rqV +W+qN+Ra++k Lus10003492 20 QKKRLTQEQVRVLERSFSFNKKLLPELKSELASQLGVPPRQVAIWYQNKRARWK 73 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 99.7 | 2.7e-32 | 20 | 111 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqv++LE+sF+ ++kL pe K+ela++Lg+ prqva+W+qn+RAR+kt+ lE d+++L ++++ +++++rLe+ev++L++el++ Lus10003492 20 QKKRLTQEQVRVLERSFSFNKKLLPELKSELASQLGVPPRQVAIWYQNKRARWKTQTLELDHNTLELKLQNAAAHKRRLEREVARLNHELSK 111 69*************************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.163 | 15 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-16 | 17 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 9.41E-17 | 18 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.1E-15 | 20 | 73 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.19E-14 | 21 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-18 | 22 | 80 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.7E-5 | 46 | 55 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 50 | 73 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.7E-5 | 55 | 71 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDFHSHETQQ QQQQMMKRPQ KKRLTQEQVR VLERSFSFNK KLLPELKSEL ASQLGVPPRQ 60 VAIWYQNKRA RWKTQTLELD HNTLELKLQN AAAHKRRLER EVARLNHELS KAQDTVVAFM 120 NHCRHGGCTT SSTINPNLLD HHHHLPPAPI TIPPPSDVEH YDDECPPMKM NPCGSSSDIN 180 FNNHGRGEEV NLQLEDELYA SFVMGGNSGS SGSTCSWD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10003492 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ884713 | 1e-56 | HQ884713.1 Linum usitatissimum clone Contig524 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9FN29 | 6e-30 | ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52 | ||||
STRING | Lus10003492 | 1e-164 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 5e-30 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Lus10003492 |