PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003471
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 368aa    MW: 40479.1 Da    PI: 10.4041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003471genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.72.7e-15175220555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+++L+
  Lus10003471 175 HNQSERRRRDRINQKMKALQKLVPNA-----NKTDKASMLDEVIDYLRQLR 220
                  *************************8.....6*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.1E-18167228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.758170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-19173247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.21E-15175224No hitNo description
PfamPF000107.4E-13175219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-16176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNNNRSWINY EVAELTWEKG QPSSNGLGSS LSPKQTWAST RPNNDTLESI VHQAASLKPP  60
TSPPSNPTSD SKWRPVAASS LKRSRTESTV ANDGKRIWDS NRSNDVENAA SYRDGNGGAG  120
RSATSSRGSG GTVMTWPLPA TYQTKPDDFD DKETTTSTRS LSSIFSKRSR ASDVHNQSER  180
RRRDRINQKM KALQKLVPNA NKTDKASMLD EVIDYLRQLR AQVEMMNNIR SMKPPPQPQM  240
VMMVPNIDQM PLFAGLGMGM NPLASSSSSS SIHMRHLLPP SAFMANTSPP FLLHHSATNM  300
NYNNTCKSSG EANLSSLNAA QSSMDVELYL KNMAAMYQQQ QQQVHNSRAN AIGAATHHSS  360
HTVQRDK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003471
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100034710.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129992432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.19e-28bHLH family protein