PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003463
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 356aa    MW: 39101.5 Da    PI: 7.1366
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003463genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014258280123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k F++   L  H r+H
  Lus10003463 258 HECPICFKGFTSGQALGGHKRSH 280
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.4E-41741IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.98E-51743No hitNo description
PfamPF139127.4E-71841IPR007087Zinc finger, C2H2
PROSITE profilePS501579.4731845IPR007087Zinc finger, C2H2
SMARTSM003550.0471840IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802040IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-8171195No hitNo description
PfamPF139123.7E-10173197IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.055173200IPR007087Zinc finger, C2H2
SMARTSM003550.064173195IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280175195IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-8253280No hitNo description
PfamPF139121.6E-10257280IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369258280IPR007087Zinc finger, C2H2
SMARTSM003550.26258280IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280260280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEEAHHDHEE EVVMRWKHVC KFCRKRFQSG RSLGGHMRSH MVDNVSALND GTLITRKKLP  60
SLPHLTEAAK SASLSVGSKN NINNGGGGGG LSCSGTSVNE DQQEQEEVAM CLMLLSRDIV  120
HVTDEDYSGK SSSDFFELSV SENTRKGGDG SSSDGLSQET ESETSNSKSR RKFQCEACNK  180
RFHSYQALGG HKASHKKIKG CSSFNSNEEE DTHDRRSKLI MMKSMKHEIL SNNIKATTTT  240
VAATKKKKKK KSSSERVHEC PICFKGFTSG QALGGHKRSH LLVGTSASVA AQEEEGEEIA  300
DIKDFMVDLN LPAQVDEESI ILSNSNSNSN LNDAVFENPW WTGSKHEQPL VAFHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244250KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003463
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100034630.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.19e-27C2H2-like zinc finger protein