PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10003458 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 215aa MW: 24331.1 Da PI: 5.6551 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 66.5 | 7.7e-21 | 32 | 182 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.....lelee....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra............. 77 p G+rF+Ptd elv++yL +k g + + +++ d + + P dL + + a+++ewy F+++d+++ +g+++n Lus10003458 32 PLGYRFKPTDRELVKHYLIPKSMGFEsdsafF---GcignTMNASDFFALPPYDLVSPI-AKKEEWYVFIHQDQQS-NGTQSNEDtkqgdddgdkltv 124 89*******************99988544442...1444368999**********7444.5679******999875.667666644678889999988 PP NAM 78 ....tksgyWkatgk.dkevlsk.kgelvglkktLvfykgrapkge.ktdWvmheyrl 128 +g+Wk+ + d +++++ +g g k +++y ++ +g+ +t+W ++eyrl Lus10003458 125 trtvNGEGFWKSNKSfDLTICDHsSGLPLGFKSRFTYYLSSSTRGTlETEWKLDEYRL 182 7765559****88775778887656667**********8877777659********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-23 | 29 | 190 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.665 | 31 | 199 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-15 | 32 | 182 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MMNSSVLSNG GEGRRRLLLV SSEETEVAKT FPLGYRFKPT DRELVKHYLI PKSMGFESDS 60 AFFGCIGNTM NASDFFALPP YDLVSPIAKK EEWYVFIHQD QQSNGTQSNE DTKQGDDDGD 120 KLTVTRTVNG EGFWKSNKSF DLTICDHSSG LPLGFKSRFT YYLSSSTRGT LETEWKLDEY 180 RLFSPPNPKG YTLLNLMPHE DQNKYTSNWQ FHGG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10003458 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10003458 | 1e-159 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14439 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 1e-13 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10003458 |