PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10003416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | SRS | ||||||||
Protein Properties | Length: 348aa MW: 37554 Da PI: 7.8793 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 217.9 | 2.2e-67 | 115 | 272 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel........kskkqsalsstkls 92 sg+++CqdCGnqakkdC +RCRtCCksrgf+C+thvkstWvpaakrrer qqlaa+++++++ +++ + ++++++ + +++s+ st+++ Lus10003416 115 SGGINCQDCGNQAKKDCLNMRCRTCCKSRGFNCQTHVKSTWVPAAKRRERLQQLAALQHQQQQPQQQTSDHQPQQQdfrgenpkRLRESSTRLSTHVA 212 7899****************************************************999888877555555555544555443233333333444444 PP DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ + e+ ++P+ev+s+avfrcv+vssvddgee+laYqtav+i GhvfkGiLydqG+ Lus10003416 213 TGATGLEVG-GHFPSEVNSAAVFRCVKVSSVDDGEEQLAYQTAVNIRGHVFKGILYDQGPT 272 444443333.34***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.4E-64 | 117 | 272 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.5E-27 | 119 | 161 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.4E-27 | 223 | 271 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MAGWFYLSGG REASSKAEEE EEEKQENNSL YLFRNEEIQS NNNHHHPHHQ GGSISRSGFG 60 FEIWPQQYYQ QQQQQQNQAS IYALAAAAAA SRSSDDSSRS GGGGIMMRSS GGGSSGGINC 120 QDCGNQAKKD CLNMRCRTCC KSRGFNCQTH VKSTWVPAAK RRERLQQLAA LQHQQQQPQQ 180 QTSDHQPQQQ DFRGENPKRL RESSTRLSTH VATGATGLEV GGHFPSEVNS AAVFRCVKVS 240 SVDDGEEQLA YQTAVNIRGH VFKGILYDQG PTSTTPTHHH HHHHSSSTPL HLMTAGTSGR 300 GAGASGGGGG EVNNPVGSGS MIDPGSLYPA PLNAFIAGTQ FFPPPRS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10003416 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012466169.1 | 1e-100 | PREDICTED: protein SHI RELATED SEQUENCE 5-like | ||||
Swissprot | Q9LQZ5 | 7e-83 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2P5YQW0 | 1e-99 | A0A2P5YQW0_GOSBA; Uncharacterized protein | ||||
STRING | Lus10003416 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 4e-62 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Lus10003416 |
Publications ? help Back to Top | |||
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