PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003416
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SRS
Protein Properties Length: 348aa    MW: 37554 Da    PI: 7.8793
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003416genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702217.92.2e-671152723153
       DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel........kskkqsalsstkls 92 
                  sg+++CqdCGnqakkdC  +RCRtCCksrgf+C+thvkstWvpaakrrer qqlaa+++++++ +++ + ++++++        + +++s+  st+++
  Lus10003416 115 SGGINCQDCGNQAKKDCLNMRCRTCCKSRGFNCQTHVKSTWVPAAKRRERLQQLAALQHQQQQPQQQTSDHQPQQQdfrgenpkRLRESSTRLSTHVA 212
                  7899****************************************************999888877555555555544555443233333333444444 PP

       DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                  ++ +  e+   ++P+ev+s+avfrcv+vssvddgee+laYqtav+i GhvfkGiLydqG+ 
  Lus10003416 213 TGATGLEVG-GHFPSEVNSAAVFRCVKVSSVDDGEEQLAYQTAVNIRGHVFKGILYDQGPT 272
                  444443333.34***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.4E-64117272IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.5E-27119161IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.4E-27223271IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAGWFYLSGG REASSKAEEE EEEKQENNSL YLFRNEEIQS NNNHHHPHHQ GGSISRSGFG  60
FEIWPQQYYQ QQQQQQNQAS IYALAAAAAA SRSSDDSSRS GGGGIMMRSS GGGSSGGINC  120
QDCGNQAKKD CLNMRCRTCC KSRGFNCQTH VKSTWVPAAK RRERLQQLAA LQHQQQQPQQ  180
QTSDHQPQQQ DFRGENPKRL RESSTRLSTH VATGATGLEV GGHFPSEVNS AAVFRCVKVS  240
SVDDGEEQLA YQTAVNIRGH VFKGILYDQG PTSTTPTHHH HHHHSSSTPL HLMTAGTSGR  300
GAGASGGGGG EVNNPVGSGS MIDPGSLYPA PLNAFIAGTQ FFPPPRS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003416
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466169.11e-100PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ57e-83SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A2P5YQW01e-99A0A2P5YQW0_GOSBA; Uncharacterized protein
STRINGLus100034160.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.14e-62SHI-related sequence 5
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]