PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003405
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CAMTA
Protein Properties Length: 1104aa    MW: 123624 Da    PI: 6.4517
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003405genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1165.21.1e-51211233105
         CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100
                  + ++rwl++ ei++iL n+ek+++++e++++p sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+ee+++fqrr+yw
  Lus10003405  21 EAQHRWLRPAEICEILRNYEKFHISTEPPNKPASGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEETESFQRRSYW 118
                  459*********************************************************************************************** PP

         CG-1 101 lLeee 105
                  +Le+ 
  Lus10003405 119 MLEHM 123
                  **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143772.70215142IPR005559CG-1 DNA-binding domain
SMARTSM010766.4E-6618137IPR005559CG-1 DNA-binding domain
PfamPF038592.5E-4521131IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.8E-4486600IPR013783Immunoglobulin-like fold
SuperFamilySSF812967.0E-15514599IPR014756Immunoglobulin E-set
PROSITE profilePS5029715.777698809IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.8E-17699809IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484039.33E-16700809IPR020683Ankyrin repeat-containing domain
CDDcd002045.85E-13703807No hitNo description
SuperFamilySSF525401.12E-7918969IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.071918940IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078919948IPR000048IQ motif, EF-hand binding site
PfamPF006120.0027920939IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0093941963IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.377942966IPR000048IQ motif, EF-hand binding site
PfamPF006122.4E-4944963IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1104 aa     Download sequence    Send to blast
MADRGSFGLA PRLDIQQLFI EAQHRWLRPA EICEILRNYE KFHISTEPPN KPASGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDVLH CYYAHGEETE SFQRRSYWML  120
EHMLCFSVVL YCYFTFPSWI FLVLMALTIL QGTYAYSIRP LLGSEVLSCL YAYAGHSSLH  180
QGNRTHSSPS NSLVNHNRSG NTDSISPSST LSSAFEDADS ADSHQTTGTH SFYRPQPLQN  240
SVTIDKVDVG PSSTHLSHSR AGSGSPVAYR HGSGSGINDS SSNIINSQGL TSWEDVYEQS  300
TRGFDNTPLR AALNSTHLGN YGVGANLMQQ VSTGSTTQVN FDGSLPIHST WQIPAGDSSL  360
HIPHGMDATF DLDLTYDFGT RLFDQRTQDF GTHNTLEPYF TGSLQQHDEL LHNNLQIELL  420
NSELQYATGS NLPIEGAADG NGRYALFAKK PLLGEEGLKK VDSFSRWVSK ELGEVDDLNM  480
KSSSGIAWNN VECGNVADES VLSPSLSQDQ LFSIMDFSPK WAYADSETEV HIVGMFLKSQ  540
EEVQKCEWSC MFGEVEVRAE VLADGILCCF APPHGFARVP LYVTCSNRVA CSEVREFDYL  600
VNSVGDVNVR GVYGGNAPEM WLHLRLEKLL SVKPSTGLSH TLDVARAKQK LVRKIMLLKE  660
EDDNHQMIEP TSEESLSHVE VKRKLLYKLI KEKLYAWLLH KVLESGKGPC VLDDDGQGVL  720
HLAAALGWDW AIKPTVAAGV SINFRDVNGW TALHWAAYCG REQTVAVLVS WRAAPGALTD  780
PSPEFPSGRT AAELASGNGH KGISGFLAES FLTSYLSTLT VKEQKDDGEN VVQTIEERTA  840
TPLNGNDVPD ALSLKDSLSA IRNATQAANR IYQVFRMQSF QRKQLSEEHE SDEFGLSDEH  900
ALSLLAGNSR RPVYSNGKAH AAATQIQKKF RGWKKRREFL IIRQRIVKIQ AHIRGHQVRK  960
QYKTVVWSVG ILEKIILRWR RKGSGLRGFR RDAMIEDLPS PQNVHPKEDD DYDYLKEGRK  1020
QNEERVEKTL NRVKSMFHDP NGRAQYRRLL TVVEGLRENQ ACSSILNHPQ DETEEGQDEE  1080
SSQQLADFDS LLDDDTFMSL AFD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003405
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021670318.10.0calmodulin-binding transcription activator 2-like
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A067JX340.0A0A067JX34_JATCU; Uncharacterized protein
STRINGLus100034050.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74062642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]