PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10003334 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 159aa MW: 18263.4 Da PI: 6.5162 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 48.7 | 2.4e-15 | 15 | 136 | 7 | 113 |
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLp.k...........kvkaeekewyfFskrdkkyatgkrknra..tksgyWkatgkd 89 P+deelvv yL +k+ + +l+ + ++ ++d+y ++ePw++ k + +++ +++yfF++ ++ ++tg r +r+ t+ g+W++ Lus10003334 15 LLPSDEELVVGYLIPKLCQLPLPSSGHVIDCDLYgQFEPWEIWsKfgghdydddgeEGEETANDMYFFTPLKNMAETGMRYERSvgTNGGTWNSEDAR 112 56********************99999999*999467*****73378888777654333344588******************53488*******999 PP NAM 90 kevlskkgelvglkktLvfykgra 113 + s++g ++ kk + + + + Lus10003334 113 RLGQSRDGVITWEKKRFRYLTRSC 136 9999999999********994322 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 12.845 | 9 | 158 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-15 | 11 | 135 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-7 | 15 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MKYHHRSQQN FAFGLLPSDE ELVVGYLIPK LCQLPLPSSG HVIDCDLYGQ FEPWEIWSKF 60 GGHDYDDDGE EGEETANDMY FFTPLKNMAE TGMRYERSVG TNGGTWNSED ARRLGQSRDG 120 VITWEKKRFR YLTRSCTEKK RKRKNNGGPT MLTRQPEG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 143 | KKRFRYLTRSCTEKKRKRK |
2 | 138 | 143 | KKRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10003334 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10003334 | 1e-117 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 1e-07 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Lus10003334 |