PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10003208 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | Dof | ||||||||
Protein Properties | Length: 414aa MW: 44709.5 Da PI: 8.003 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.6 | 1.3e-38 | 33 | 92 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ ++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ s Lus10003208 33 KEGVNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNIPVGGGSRKNKRPS 92 57799****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-24 | 33 | 84 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.0E-33 | 35 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.91 | 36 | 90 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 38 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MDTAQWPQGI VVKPSNGTTN PQKSAGGKIN GVKEGVNCPR CNSTNTKFCY YNNYSLTQPR 60 YFCKTCRRYW TEGGTLRNIP VGGGSRKNKR PSSSSASSFS SVSPNTSKKL LPGLVSSSSN 120 YSAAPSLPSS TKIAAPQNPK MMMMNQEEGH DLNGQMVFPR SFTELMHNHH HQVQPTIAVD 180 DHHDRNNQVS ALELLNRSSG GLNSNSGSFM HSHDHGHGQG QDAGFDNYTS GLSFLQHQDF 240 KPSSSSSSLS FSLDGVGLGR PPLLFPFQDL KQVPTIASNG KANDDHDDHG RAAAADSSGY 300 WTGMLGGGSC RRYFSVSSSS SSLYSSRERE SGDLHGWKWR LRLGQTVLDF TVAVYLELKS 360 NVDMTVFENS APVVCTGETI GFFMPCDTSG ASVMESEPCA LHGSDEVGIG RRP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10003208 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303678.1 | 5e-63 | dof zinc finger protein DOF4.6 isoform X1 | ||||
TrEMBL | A0A2P2JZL4 | 1e-61 | A0A2P2JZL4_RHIMU; Uncharacterized protein MANES_02G005000 | ||||
STRING | Lus10003208 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF674 | 34 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 3e-34 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10003208 |