PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10003183 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | TALE | ||||||||
Protein Properties | Length: 217aa MW: 24783.1 Da PI: 6.7992 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 24.6 | 4.2e-08 | 166 | 199 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Lus10003183 166 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 199 469*****************************87 PP | |||||||
2 | ELK | 28.9 | 2.7e-10 | 120 | 141 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ Lus10003183 120 ELKHELKQGYKEKLVDIREEIL 141 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01256 | 2.3E-26 | 8 | 63 | IPR005541 | KNOX2 |
Pfam | PF03791 | 6.8E-19 | 12 | 62 | IPR005541 | KNOX2 |
SMART | SM01188 | 9.2E-4 | 120 | 141 | IPR005539 | ELK domain |
Pfam | PF03789 | 9.4E-7 | 120 | 141 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.144 | 120 | 140 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.758 | 140 | 203 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-16 | 142 | 205 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.9E-11 | 142 | 207 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.23E-11 | 143 | 204 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 147 | 204 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.5E-18 | 160 | 199 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MAKYSVVGNG PVVDEKELDQ FMTHYVLLLC SFKDQLQQHV RVHAMEAVMA CWELEQALQS 60 LTGVSPGEGT GATMSDDDDD QVDSDTNLYN ASMDAMDTMG FGPLVPTETE RSLMERVRLE 120 LKHELKQGYK EKLVDIREEI LRKRRAGKLP GDTTSVLKSW WQSHSKWPYP TEEDKARLVQ 180 ETGLQLKQIN NWFINQRKRN WHSNPSGSTV KSKRKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 3e-13 | 143 | 206 | 8 | 71 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 196 | 215 | RKRNWHSNPSGSTVKSKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10003183 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017258684.1 | 1e-140 | PREDICTED: homeobox protein knotted-1-like 3 isoform X1 | ||||
Swissprot | P48000 | 1e-132 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A161XAU7 | 1e-139 | A0A161XAU7_DAUCS; Uncharacterized protein | ||||
STRING | Lus10003183 | 1e-161 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-126 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Lus10003183 |
Publications ? help Back to Top | |||
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