PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10003078
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 339aa    MW: 37777.7 Da    PI: 6.1886
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10003078genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.73.7e-331032213121
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....seceaesssssasnsssgkaaksaak 96 
                  +kk rhski T+ g RdRRvRls+ + ++fFdLqd+LGfdk+skt++WLl  ++pai  l +++ ++     +e e+e+    ++n++ g++ ++++ 
  Lus10003078 103 KKKERHSKIETATGVRDRRVRLSIGTSRKFFDLQDMLGFDKPSKTLDWLLSHSEPAIHRLQQLQRKPTtgdiMELENEEGDDDDDNDGDGDHDQEHEA 200
                  79*************************************************************77777332222244444444444444444444443 PP

          TCP  97 skksqksaasalnlakesrakarar 121
                     +q+ ++    +a+ +r k r++
  Lus10003078 201 LLLNQHLQE----MARATRTKDRST 221
                  333333333....333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-32103225IPR005333Transcription factor, TCP
PROSITE profilePS5136930.911104162IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSDQSHGLSS SPYLTMFDPE ITNTTSNNST YLCSQYPYPP NNNHGQLMTL PFLLPTYPYH  60
ITYPDPPPPT PPHSVSCNLD NNANEMMMLM GSSGGKEIRM NVKKKERHSK IETATGVRDR  120
RVRLSIGTSR KFFDLQDMLG FDKPSKTLDW LLSHSEPAIH RLQQLQRKPT TGDIMELENE  180
EGDDDDDNDG DGDHDQEHEA LLLNQHLQEM ARATRTKDRS TIMANEHQQE PFGFGRVVSN  240
SNNSLFTTTT TAAPEDESFM LMKWNHLKHP ASSSSSSSSL TTTTTINHAI PSSIFPHHQN  300
ISTASTWDIN AATGCYSALL SQRNGPTSRE RRGEGRAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-14109162154Putative transcription factor PCF6
5zkt_B1e-14109162154Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10003078
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100030780.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.27e-26TCP family protein