PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10003008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 80aa MW: 8342.6 Da PI: 9.0191 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 23.1 | 2.1e-07 | 36 | 70 | 5 | 39 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C +CGn a+ C ++ C+ CC C+ hv Lus10003008 36 RPKCMQCGNLARSRCPYQSCKSCCSKAQNPCHIHV 70 679*******************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 80 aa Download sequence Send to blast |
MVASSPAPII NTSDSSLTPT AAASGSQPKT VRHVNRPKCM QCGNLARSRC PYQSCKSCCS 60 KAQNPCHIHV IRCELGQAG* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10003008 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440124.1 | 9e-25 | uncharacterized protein LOC18046085 isoform X2 | ||||
Refseq | XP_006477042.1 | 8e-25 | uncharacterized protein LOC102615497 isoform X1 | ||||
Refseq | XP_006477043.1 | 8e-25 | uncharacterized protein LOC102615497 isoform X2 | ||||
Refseq | XP_011032005.1 | 8e-25 | PREDICTED: uncharacterized protein LOC105130965 | ||||
TrEMBL | A0A067EP79 | 2e-23 | A0A067EP79_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A3N7EVY5 | 4e-24 | A0A3N7EVY5_POPTR; Uncharacterized protein | ||||
TrEMBL | V4VKV2 | 2e-23 | V4VKV2_9ROSI; Uncharacterized protein | ||||
STRING | Lus10003008 | 1e-50 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32730.1 | 1e-22 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10003008 |