PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002953
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 189aa    MW: 20843.4 Da    PI: 4.5895
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002953genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.9e-201160255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++aa++ l+g
  Lus10002953 11 RYRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDAAALFLRG 60
                 7*******9.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.7E-291168IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-201167IPR016177DNA-binding domain
PROSITE profilePS5103221.6011167IPR001471AP2/ERF domain
SMARTSM003802.0E-321173IPR001471AP2/ERF domain
PfamPF008479.4E-141160IPR001471AP2/ERF domain
PRINTSPR003672.1E-101223IPR001471AP2/ERF domain
CDDcd000182.22E-121969No hitNo description
PRINTSPR003672.1E-103450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MEECGGEGRR RYRGVRQRKW GKWVSEIREP GKKTRIWLGS YETAEMAAAA YDAAALFLRG  60
REGLNFPELA DGLPRPASSS AEDVQTAAQL AAARMVNGES NNSGGGLRPV RVGLTPSQIQ  120
AINETPMDSP NYMYWMELAA GALLSPEKQE YNVGVSMDLG DVIDGCDFSG LEEIMEMHHY  180
QPSIWDYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-161067463ATERF1
3gcc_A6e-161067463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002953
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454096.14e-55ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ283e-42ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLB9GX158e-54B9GX15_POPTR; Uncharacterized protein
STRINGLus100029531e-137(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.18e-36ERF family protein