PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002934
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 370aa    MW: 40763 Da    PI: 7.8287
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002934genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.4e-12451101786
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                   +p kf++++g++   +  ++l+d++g +W v+l  +++ g+++l kG  eF+k   L  g  vvF+l+ 
  Lus10002934  45 FIPTKFLRKYGNN--LQNRIILKDPTGTEWPVEL--TNSEGEIWLDKGFPEFAKFYSLSYGYLVVFQLQF 110
                  59********977..6679***************..*******************************753 PP
2B347.72.7e-15257358498
                  E-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE.........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
           B3   4 vltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.......rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                  +  ps+ + + ++ +p +fa+eh  +    ++k + ++ ++gr+W+v++++        k+ ++ + ++GWk+F+  n+L +gD++ F+l+ + ++ +
  Lus10002934 257 AVQPSYLSPLPNVAIPLSFAKEHlkD---GNGKAILVRVSDGRKWKVNCTVscdpagpAKRMKAWFGGSGWKDFALGNQLSVGDVCAFELTTTtTSVS 351
                  55677778888899*********532...467799999***********9999999876777778889*********************997768887 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  + v++fr
  Lus10002934 352 FGVTIFR 358
                  7888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-1617127IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.04740127IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-1445134IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.29246127IPR003340B3 DNA binding domain
PfamPF023629.8E-1046113IPR003340B3 DNA binding domain
CDDcd100178.69E-1048125No hitNo description
Gene3DG3DSA:2.40.330.107.9E-19245358IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-17247358IPR015300DNA-binding pseudobarrel domain
CDDcd100177.35E-19252358No hitNo description
PROSITE profilePS5086312.731254360IPR003340B3 DNA binding domain
SMARTSM010197.0E-8254360IPR003340B3 DNA binding domain
PfamPF023622.8E-13255358IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MAISTTKNSR TGGGGSGPHF FKIILDEALR DGKLASLLLF LLIPFIPTKF LRKYGNNLQN  60
RIILKDPTGT EWPVELTNSE GEIWLDKGFP EFAKFYSLSY GYLVVFQLQF KADDDDDCFK  120
IVVFDPTATE INYPPIQQQL QTNPTSVEEE DSTSVFKSDD DSTSDSESDG EVRILSRQSS  180
ELDPPSPKIR RTISSSDVGR CKSKSSYSEL GASAPAKVLD KATGENRRGS LSKEEKREAI  240
DRARSAFTSK NPSFVLAVQP SYLSPLPNVA IPLSFAKEHL KDGNGKAILV RVSDGRKWKV  300
NCTVSCDPAG PAKRMKAWFG GSGWKDFALG NQLSVGDVCA FELTTTTTSV SFGVTIFRNY  360
KQPWTWMST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002934
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100029340.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-24B3 family protein