PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002880
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 496aa    MW: 52056.2 Da    PI: 8.2492
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002880genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.5e-126893227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C +++rtG+C yG+rC+F+H++
  Lus10002880 68 DEADCIYYLRTGFCGYGARCRFNHPR 93
                 6799********************96 PP
2zf-CCCH39.21.2e-12113139127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  y+++ C++++rtG Ck+G++Ck++H++
  Lus10002880 113 YGQPVCQYYMRTGSCKFGASCKYHHPK 139
                  899**********************96 PP
3zf-CCCH35.12.2e-11160185227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C ++ +tG+Ck+G++CkF H++
  Lus10002880 160 GEKECTYYIKTGQCKFGATCKFDHPQ 185
                  7899********************97 PP
4zf-CCCH361.2e-11328353126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C+++++tG Ck+G++C+++H+
  Lus10002880 328 PGQPECQYYLKTGDCKFGSSCRYHHP 353
                  5789*********************8 PP
5zf-CCCH35.22.1e-11376400327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                   +lC ++a+ G+Ck+G+ CkF H++
  Lus10002880 376 APLCTHYAQRGQCKFGSACKFDHPM 400
                  68*********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.7E-56693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0516694IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-106893IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-67095IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-57293IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-8112139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.586112140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-6112141IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10113139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-6117139IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4158185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315158186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6160186IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8160185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4164184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.089327355IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5327354IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-9329353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5331354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5333357IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-7373400IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.3373401IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-9376400IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5377400IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4378398IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MYRGGAPRIP GRGNFSSMYG RGQEGSQSDP SPEWTTTAPG PETGLEEGLW QLGLGGGEGE  60
SGYPERPDEA DCIYYLRTGF CGYGARCRFN HPRDRAAVLG AARAGGGEFP ERYGQPVCQY  120
YMRTGSCKFG ASCKYHHPKQ ALGSVAPVPL NYYGYPLRPG EKECTYYIKT GQCKFGATCK  180
FDHPQPPNVQ VPPESLPPQI APMASPLAAP ALYPPPMQSP QVPSSQQYGV LVARPPLMQS  240
SYAQGPYGPM LLSPGGVVSY PSWSPYPGPV NPVAQSPGTQ SALGSSSLYG ITQLSPSAPA  300
YTGAYAPMPS SIGPSSSSQR DTSFPERPGQ PECQYYLKTG DCKFGSSCRY HHPSELSAPK  360
SNLALSPLGL PLRPGAPLCT HYAQRGQCKF GSACKFDHPM GMSYSPSASS LVDMPVAPYP  420
VGSSIGTLAP SSSSTDMRPE LISGSSKESS SSRIASSPSG FIGSTFSKNE TASPSSMQSS  480
GSLTGSSSSA HASSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002880
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634959.10.0zinc finger CCCH domain-containing protein 34-like
SwissprotQ6NPN31e-157C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A2C9WB840.0A0A2C9WB84_MANES; Uncharacterized protein
STRINGLus100028800.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-121C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]