PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10002794 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 261aa MW: 28958.7 Da PI: 10.0886 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 103.3 | 2e-32 | 56 | 150 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 lfqr+w e+Dei+lL Gl++f +k+g++p+++i ++y+fvkks+++++s sql eK rLKkKf+kk++ k+g+++sf+k+hdqk+f+lskkiWgs Lus10002794 56 LFQRIWGEDDEIALLNGLLEF-SKRGVDPFKEIADVYDFVKKSLNIDISVSQLKEKAARLKKKFTKKSNG-KDGEDKSFAKQHDQKCFDLSKKIWGS 150 79*******************.99******************************************9998.9***********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.2E-28 | 57 | 149 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MEAKSSSKAT TSNATASKAR KRATETETEV KDTKRRKESS SSAAAEKTED SAKKQLFQRI 60 WGEDDEIALL NGLLEFSKRG VDPFKEIADV YDFVKKSLNI DISVSQLKEK AARLKKKFTK 120 KSNGKDGEDK SFAKQHDQKC FDLSKKIWGS EASSRAVQAS NNATPKPNKK EKGNSSNGIT 180 PKRHAGVEDG AADRKKDMLP GEDIRDVVIK KGLDMVEGSK RGEFEERWKD VNVATLKLFV 240 QREQLVVDQA KLMLAAMDED * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 19 | 36 | RKRATETETEVKDTKRRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10002794 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ887819 | 9e-40 | HQ887819.1 Linum usitatissimum clone GMU2AYZ01AZVCG microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021690494.1 | 7e-65 | GLABROUS1 enhancer-binding protein-like | ||||
Refseq | XP_021690495.1 | 7e-65 | GLABROUS1 enhancer-binding protein-like | ||||
Refseq | XP_021690496.1 | 7e-65 | GLABROUS1 enhancer-binding protein-like | ||||
STRING | Lus10002794 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25210.1 | 1e-16 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10002794 |