PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10002763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 94aa MW: 10602.1 Da PI: 9.8697 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.9 | 4.8e-32 | 26 | 76 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdae+a+i+fss+g+lyey++ Lus10002763 26 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEIALIVFSSRGRLYEYAN 76 79***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-41 | 18 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.571 | 18 | 78 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-30 | 19 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.73E-40 | 19 | 78 | No hit | No description |
PRINTS | PR00404 | 8.0E-34 | 20 | 40 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 20 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-27 | 27 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-34 | 40 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.0E-34 | 55 | 76 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 94 aa Download sequence Send to blast |
MSGYQSDSRE DSPSQRKIGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEI 60 ALIVFSSRGR LYEYANNSSS FHLQILIGGM DQL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-21 | 18 | 77 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-21 | 18 | 77 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-21 | 18 | 77 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-21 | 18 | 77 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-21 | 18 | 77 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-21 | 18 | 77 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-21 | 18 | 77 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-21 | 18 | 77 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-21 | 18 | 77 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-21 | 18 | 77 | 1 | 60 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10002763 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015576689.1 | 3e-43 | floral homeotic protein AGAMOUS | ||||
Swissprot | Q43585 | 3e-41 | AG_TOBAC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A0P0HVT9 | 8e-43 | A0A0P0HVT9_MERAN; Agamous 2-like protein | ||||
STRING | Lus10002763 | 1e-62 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18960.1 | 5e-30 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10002763 |
Publications ? help Back to Top | |||
---|---|---|---|
|