PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002657
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 516aa    MW: 55793.1 Da    PI: 6.3904
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002657genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.69.5e-11242298155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +       rk  + g ++ +++Aa+a++ a++k++g
  Lus10002657 242 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEDKAARAYDLAALKYWG 298
                  57*******************4444.2344336655.7799999*************98 PP
2AP250.26.3e-16328379155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Lus10002657 328 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 379
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-8242298IPR001471AP2/ERF domain
CDDcd000182.63E-18242308No hitNo description
SuperFamilySSF541711.11E-14242308IPR016177DNA-binding domain
SMARTSM003801.6E-22243312IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-12243307IPR001471AP2/ERF domain
PROSITE profilePS5103217.346243306IPR001471AP2/ERF domain
PRINTSPR003672.7E-6244255IPR001471AP2/ERF domain
PfamPF008472.5E-10328379IPR001471AP2/ERF domain
CDDcd000185.68E-11328387No hitNo description
SuperFamilySSF541717.85E-18328388IPR016177DNA-binding domain
SMARTSM003803.2E-31329393IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-18329387IPR001471AP2/ERF domain
PROSITE profilePS5103219.203329387IPR001471AP2/ERF domain
PRINTSPR003672.7E-6369389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MAPVPAAVGS NWLSFSLSPM EMLRSYDEAA AAAAAASDDS TSHHHYFLDN FYSHGWGNPK  60
DGGAVAETAL LTSFMDQQQS GGGRTPPPQP KLEDFLGDSA AMVTYAENSQ TGGGGDAQDS  120
SSLTQIYDNG ASAYFNDHQQ DLKAIAAFQG GFSTNSGASE VDDDGRSTEF MAAAATAVTQ  180
SVGNDLAYSR NALSLAVNTA APSAHNNNDS SSNSSGKGMA VVSVVDSDCN KKLADTFGQR  240
TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ ARKGRQGGYD KEDKAARAYD LAALKYWGPT  300
ATTNFPVSNY NKELEEMKKS SGFSRGASIY RGVTRHHQQG RWQARIGRVA GNKDLYLGTF  360
ATEEEAAEAY DIAAIKFRGM NAVTNFEMNR YDVEAIMKSA LPIGGAAKRL KISLESEQKP  420
ALTHHDPQHH HHDENNISFG SVQQQQQQIP SIPCGIPYDA AYYNHSLFHH FPAAAGNSQG  480
QGGSNISAVP TSNMLTPPMM PQTTDFFLWP HHQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002657
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021662718.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X2
SwissprotQ52QU21e-159AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A067KD770.0A0A067KD77_JATCU; Uncharacterized protein
STRINGLus100026570.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-155AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]