PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10002426 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 111aa MW: 11957.8 Da PI: 9.1005 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.3 | 2.4e-12 | 5 | 92 | 17 | 93 |
E--HHH.HTT...---..--SEEEEEETTS......-EEEEEE..EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 17 vlpkkfaeeh...ggkkeesktltledesg......rsWevkliyrkksgr.....yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 v+p +fa++h +g+ ++l+ g ++W++ + ++k ++ + ++kGW++F ++n+L +gD++++++++ +++l+ Lus10002426 5 VMPVSFARRHilkSGN--HCANVVLKAAGGvssssgKQWSLAVEKDRKVKAgpsygVSFGKGWQQFKEDNNLGDGDVCLLQFES-CNGRLC 92 78999*****986333..334677777766777777*******775555557788899***********************865.666555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.237 | 1 | 99 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-9 | 5 | 93 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-11 | 5 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-10 | 5 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.48E-13 | 5 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 111 aa Download sequence Send to blast |
MILQVMPVSF ARRHILKSGN HCANVVLKAA GGVSSSSGKQ WSLAVEKDRK VKAGPSYGVS 60 FGKGWQQFKE DNNLGDGDVC LLQFESCNGR LCISCPVNSS IYHSKLAYCF * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10002426 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10002426 | 2e-76 | (Linum usitatissimum) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10002426 |