PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10002425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 179aa MW: 20226 Da PI: 9.1669 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.1 | 2.8e-12 | 20 | 111 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 l ++ l ++ l lp kf+++hg++ s +l ++g +v + r ++l++GW eF + + g fvvFk+ g+s f v Lus10002425 20 L--PYKLHQKKLKLPLKFVRRHGSE--ISASAKLSLPNGHACNVGVEKrrenG----RkdeeIWLSNGWGEFLEHLSISKGCFVVFKYRGHSAF--DV 107 3..67778888***********966..77789999999999999997744433....34567**************************998999..88 PP EEE- CS B3 95 kvfr 98 +f+ Lus10002425 108 EIFD 111 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.8E-18 | 7 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-16 | 9 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.39E-13 | 14 | 111 | No hit | No description |
PROSITE profile | PS50863 | 8.839 | 14 | 113 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-4 | 15 | 113 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-9 | 19 | 110 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MASSSSSITK PHTSFFRVVL PYKLHQKKLK LPLKFVRRHG SEISASAKLS LPNGHACNVG 60 VEKRRENGRK DEEIWLSNGW GEFLEHLSIS KGCFVVFKYR GHSAFDVEIF DLATCSISYP 120 DPPPHHDHQQ SGSPENVSSP EIIAISDDED EKYEKLVESL KASGIVTSRW FKRRIRMM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10002425 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10002425 | 1e-130 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10002425 |