PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002424
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 600aa    MW: 67978.8 Da    PI: 7.1048
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002424genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS234.83.9e-722245841374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn....sseelaalklfsevsPilkf 93 
                  l +lLl++Ae v  ++  +a++lL+r + +as + ++ qR++++f+eAL++r+ r  ++ +++      +s ++       +  a   +++  P+ ++
  Lus10002424 224 LAHLLLAAAEKVGFHQYDRASKLLTRCEWIASARSNAAQRVVHCFAEALRERIDRgLGKFIVRMP-DPYSSFNSiynnGLGTNLASICLHQKAPFSQV 320
                  579****************************************************4444444443.33333333233333333333459********* PP

         GRAS  94 shltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rl 186
                   ++t+ q I e + ++ +++H iD++i  G+ W aL+qaLa+R        +lR+T++++ +  ++  +e tg+rL++fA++++ pf+f+v++++  l
  Lus10002424 321 MQMTTVQSIIENIGTSaRKLHCIDLEIRSGVIWTALMQALANRGadcVMVEHLRVTAIARIS--ERYHVEDTGRRLESFARSMNFPFSFHVVYVNtCL 416
                  *************9997899***********************95444588*********55..999*************************776599 PP

         GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                  +d++ + +rv  +E+++V l+                     +++k+l+P+++vv e ea+hns+ F++rf+e+l yysa fdsle+ + ++ e r+ 
  Lus10002424 417 SDIREDVFRVAFDETVVVRLM---------------------RVLKHLNPTLMVVGETEANHNSPIFVNRFIESLFYYSAYFDSLETCMYEDVEYRTI 493
                  *****************9754.....................35689*************************************************** PP

         GRAS 285 vErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +E+  l+  ++n+va+eg+er+ r+ +le Wr  +++ + + ++ +se+ a qa+l++++++ +   +++++ + l++gWk+ pL+s+SaW+
  Lus10002424 494 IEAT-LSHGLRNMVAMEGNERTSRNVKLEVWRTFFSTrFKMVELGFSETSAYQASLVIKQFQeWSSCSIDKDGEGLTIGWKGTPLFSLSAWK 584
                  ***9.*****************************9865888889999***************8888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.475198563IPR005202Transcription factor GRAS
PfamPF035141.3E-69224584IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MAPVDNQDHS EINRPTGSQI NQQEENMFSM EELGQVYPLK PARSTESVIK GLQLFNDMSS  60
KLQPQSEPSS HNNNNNNKGM SFEDYLVSCF PAPAAAQPMH EIKRLENISN NRNTSSGTNT  120
NNNGRLSASL ELLNSYGSGF RKLVNNNNII NNQSVNMSTA SKPGAEANTY TRKLSTEGVM  180
RVAGERYIQF SEHHRCDDFS ILMHPFGYAL SAGLSEEETK DVELAHLLLA AAEKVGFHQY  240
DRASKLLTRC EWIASARSNA AQRVVHCFAE ALRERIDRGL GKFIVRMPDP YSSFNSIYNN  300
GLGTNLASIC LHQKAPFSQV MQMTTVQSII ENIGTSARKL HCIDLEIRSG VIWTALMQAL  360
ANRGADCVMV EHLRVTAIAR ISERYHVEDT GRRLESFARS MNFPFSFHVV YVNTCLSDIR  420
EDVFRVAFDE TVVVRLMRVL KHLNPTLMVV GETEANHNSP IFVNRFIESL FYYSAYFDSL  480
ETCMYEDVEY RTIIEATLSH GLRNMVAMEG NERTSRNVKL EVWRTFFSTR FKMVELGFSE  540
TSAYQASLVI KQFQEWSSCS IDKDGEGLTI GWKGTPLFSL SAWKFSRDRL GRFFNYRFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-2823258326377Protein SCARECROW
5b3h_D1e-2823258326377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002424
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538341.10.0DELLA protein RGL1
TrEMBLB9RND90.0B9RND9_RICCO; DELLA protein RGL2, putative
STRINGLus100024240.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.16e-41RGA-like protein 3