PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002412
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GATA
Protein Properties Length: 284aa    MW: 30860 Da    PI: 5.6453
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002412genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA504.1e-16195231135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nCg ++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Lus10002412 195 CTNCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 231
                  *****99999***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.6895994IPR010399Tify domain
SMARTSM009792.6E-115994IPR010399Tify domain
PfamPF062001.0E-126393IPR010399Tify domain
PROSITE profilePS5101712.937127169IPR010402CCT domain
PfamPF062032.8E-16127169IPR010402CCT domain
PROSITE profilePS5011411.161189248IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-14189242IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-12191240No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15194236IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.9E-13195231IPR000679Zinc finger, GATA-type
PROSITE patternPS003440195222IPR000679Zinc finger, GATA-type
CDDcd002026.97E-15195241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MYNQSESMDF PPHDLGGEDT TGVADSMDQH DHIVYDDAAA AADVPVDDMS PDSVYVDGGA  60
DITNQLTLTF RGQVYVFDDV TPDKVQAVLL LLGGCEINSG TNGAEDTPQC QRATGVDYPD  120
RSTQHHRAAS LNRFRQKRKE RCFDKKVRYS VRQEVAQRMQ RSKGQFTSSK KSDGSCGLDG  180
SQNSGRDDSQ QETLCTNCGI SSKSTPMMRR GPSGPRSLCN ACGLFWANRG TLRDMSKKSQ  240
DHASVATEKK KVEGEGGKVG EGIDTHNELV GLISARPLRD TDV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002412
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579795.11e-118GATA transcription factor 25
SwissprotQ9LRH67e-74GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2P2JT471e-116A0A2P2JT47_RHIMU; GATA transcription factor 25
STRINGLus100024120.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.33e-73GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]