PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001941
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TALE
Protein Properties Length: 384aa    MW: 43078.8 Da    PI: 6.4726
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001941genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.1e-073243562254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp++e++++L +++gL+ +q+ +WF N+R +
  Lus10001941 324 WPYPTEEDKARLVEETGLQLKQINNWFINQRKR 356
                  69*****************************87 PP
2ELK28.33.9e-10277298122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+ ++ ++++E++
  Lus10001941 277 ELKHELKQGYKDKIADIREEIL 298
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-18107151IPR005540KNOX1
PfamPF037903.2E-17109150IPR005540KNOX1
SMARTSM012563.5E-26162218IPR005541KNOX2
PfamPF037911.5E-18169217IPR005541KNOX2
PROSITE profilePS5121310.109277297IPR005539ELK domain
SMARTSM011880.001277298IPR005539ELK domain
PROSITE profilePS5007111.677297360IPR001356Homeobox domain
SMARTSM003898.8E-11299364IPR001356Homeobox domain
SuperFamilySSF466893.55E-16299364IPR009057Homeodomain-like
CDDcd000867.72E-12300361No hitNo description
Gene3DG3DSA:1.10.10.601.4E-24304361IPR009057Homeodomain-like
PfamPF059201.0E-17317356IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEFHHHSEEV PDLHNFPSDQ TQQQQQQVPT ASSQSPPNNW LNSALLLRGP QHPPAADTNF  60
LNLAASSDII HNTTTPSDSI LNQSHNNLKQ NSNTPSESES GGGDSSGRYK GEILAHPLYE  120
QLLSAHVACL RIATPVDQLP RIDAQLAQSH NIVSKYPHHH HLHLPASPDH KELDQFMSHY  180
FLLLCSFKEQ LQEHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGTGATMS DEDDDGHVVV  240
VESELGAVTT SFDDSMGFGP LVPSETERSL MERVRAELKH ELKQGYKDKI ADIREEILRK  300
RRAGKLPGDT TSVLKSWWQS HSKWPYPTEE DKARLVEETG LQLKQINNWF INQRKRNWHT  360
NPSSTSTSTS SKTKRKRSQV DLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12300364872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001941
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028211131.11e-158homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-151KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A445G9U71e-157A0A445G9U7_GLYSO; Homeobox protein knotted-1-like 3 isoform A
STRINGLus100019410.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-146KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]