PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10001902 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 325aa MW: 36545.4 Da PI: 4.7706 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.9 | 2.4e-29 | 137 | 197 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK++ g+++prsYYrCt++ +C++ k+v+rs+edp+++e+tY+g+H+++ Lus10001902 137 DDGYSWRKYGQKDILGAKYPRSYYRCTYRstqNCWAVKQVQRSDEDPTIFEVTYRGTHTCS 197 8**************************99899***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.607 | 131 | 194 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.2E-27 | 133 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-25 | 135 | 198 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-38 | 136 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-26 | 137 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAGGWTCEQR TALVNELIQG IEFAKQLRFH LKDKEESSAV EVADGLVERI LSSYDKALLI 60 LNWSTGPMGQ QPLQAATGSG VPGSPLSWNG SPPRSDVFYG TKDNQVPDYA SKKRKTVARW 120 TDHVRISSEN GLESCIDDGY SWRKYGQKDI LGAKYPRSYY RCTYRSTQNC WAVKQVQRSD 180 EDPTIFEVTY RGTHTCSYGQ QTEKQEQKQS IDCSSSSNHQ LRPQDDLQEV MENKETIPFT 240 FPTTYQLPNN SFLSPATPPE PSYRPVSRFG ETQTSLQPLN SDFADIISAY TSVSSTNSPI 300 LDLDCQLDSF ELVPNFSYDP EFFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-18 | 136 | 196 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10001902 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022522.1 | 1e-111 | PREDICTED: probable WRKY transcription factor 41 | ||||
TrEMBL | C9DI10 | 1e-108 | C9DI10_9ROSI; WRKY transcription factor 21 | ||||
STRING | Lus10001902 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF493 | 34 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 6e-67 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10001902 |