PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001902
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 325aa    MW: 36545.4 Da    PI: 4.7706
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001902genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.92.4e-29137197259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgy+WrKYGqK++ g+++prsYYrCt++   +C++ k+v+rs+edp+++e+tY+g+H+++
  Lus10001902 137 DDGYSWRKYGQKDILGAKYPRSYYRCTYRstqNCWAVKQVQRSDEDPTIFEVTYRGTHTCS 197
                  8**************************99899***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.607131194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.2E-27133197IPR003657WRKY domain
SuperFamilySSF1182903.27E-25135198IPR003657WRKY domain
SMARTSM007748.5E-38136198IPR003657WRKY domain
PfamPF031061.8E-26137196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAGGWTCEQR TALVNELIQG IEFAKQLRFH LKDKEESSAV EVADGLVERI LSSYDKALLI  60
LNWSTGPMGQ QPLQAATGSG VPGSPLSWNG SPPRSDVFYG TKDNQVPDYA SKKRKTVARW  120
TDHVRISSEN GLESCIDDGY SWRKYGQKDI LGAKYPRSYY RCTYRSTQNC WAVKQVQRSD  180
EDPTIFEVTY RGTHTCSYGQ QTEKQEQKQS IDCSSSSNHQ LRPQDDLQEV MENKETIPFT  240
FPTTYQLPNN SFLSPATPPE PSYRPVSRFG ETQTSLQPLN SDFADIISAY TSVSSTNSPI  300
LDLDCQLDSF ELVPNFSYDP EFFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18136196868OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001902
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022522.11e-111PREDICTED: probable WRKY transcription factor 41
TrEMBLC9DI101e-108C9DI10_9ROSI; WRKY transcription factor 21
STRINGLus100019020.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.16e-67WRKY family protein