PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10001879 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 162aa MW: 18646.2 Da PI: 10.4885 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 46.6 | 6.7e-15 | 48 | 86 | 22 | 59 |
EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 22 rsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 r+YYrC + +C+++k+ver++ dpk++++tY++eHnh+ Lus10001879 48 RGYYRCNFCkTCMARKQVERNKFDPKMFIVTYTEEHNHH 86 99*****9889***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.4E-15 | 27 | 86 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.6E-7 | 43 | 87 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-11 | 47 | 86 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-11 | 48 | 86 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.639 | 48 | 85 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MYGEEASREE QIRPRNVRRH LHGGPQPPPP QPPQLKLNFV SLYCGGFRGY YRCNFCKTCM 60 ARKQVERNKF DPKMFIVTYT EEHNHHPLWP PQLKFNCFSL YGGGFRGYSR CSSKNMFGEE 120 ASRGTNSTRK CSSSPKRRTT TTTPWPPQLA QPPRRGHHSL S* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10001879 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10001879 | 1e-117 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 1e-16 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10001879 |