PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001876
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 450aa    MW: 49626.9 Da    PI: 5.1086
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001876genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM392.5e-12171258699
          NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                   F+Pt eelv++yLk k++g++l+  + i+e+d+y    Pw++ p     ++++  fF+ ++ k+a+ kr +   + g Wk  g+++ +l k+++ 
  Lus10001876 171 NFNPTAEELVNYYLKGKAKGEPLPP-NLIREIDLYGDkTPWEIfP-----GNDR--FFTFTKLKKANAKRVSMNLACGKWKWHGNNRGILGKQTQR 258
                  6*********************999.89******97648****33.....3333..555555566677788888889************9965443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1170701.05E-4210155No hitNo description
ProDomPD0109789.0E-5412155No hitNo description
Gene3DG3DSA:2.60.40.104.4E-1531157IPR013783Immunoglobulin-like fold
SMARTSM007693.5E-2831148IPR013990Water stress and hypersensitive response domain
PfamPF031682.0E-1551146IPR004864Late embryogenesis abundant protein, LEA-14
PROSITE profilePS5100511.35166311IPR003441NAC domain
SuperFamilySSF1019414.45E-12171254IPR003441NAC domain
PfamPF023654.8E-7171260IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009269Biological Processresponse to desiccation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MLSSSSRWLI AMDRAKNYIT EKVTNMKKPE ASVTDVDLKS LHRNHIEYVS KVSIENPYPT  60
PIPICEITNV LKSDSRMIAH GTIPDPGSLK AGGKTDLEVP VKVPHIILVS LVRDKGRDWD  120
IDYELELGLV IDIPVVGNFT IPLSSRGEVK LHTLSYVFSS GGGSNNNNNN NFNPTAEELV  180
NYYLKGKAKG EPLPPNLIRE IDLYGDKTPW EIFPGNDRFF TFTKLKKANA KRVSMNLACG  240
KWKWHGNNRG ILGKQTQRKE SDYVLSEILK KPQRSEDREI EERSMVTDLG VTATCGDTPS  300
SSLVIVGSSS VEDCNDVQDI HHHVAAASDD MYVTEFCTDA SQCLVEEFTS FPAVSTPMKA  360
HDVQGSRSAA ETLQQDIDLL WLLAEAMATD TTIDEEDDSQ GAAGTCGQST TSLPALKLQY  420
PQSYNFGDYL RLSSVITATV SSQTPRYVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xo8_A1e-53121585151At1g01470
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001876
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100018760.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.16e-08NAC domain containing protein 20