PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10001825 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 26286.1 Da PI: 4.3972 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.3 | 6.3e-06 | 125 | 146 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C k F++ s L +H+rtH Lus10001825 125 PCVVCQKAFRSFSALIHHLRTH 146 5********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 26 | No hit | No description |
SuperFamily | SSF57667 | 7.02E-5 | 123 | 149 | No hit | No description |
PROSITE profile | PS50157 | 9.556 | 124 | 146 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 7.4E-6 | 126 | 147 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 126 | 146 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MNTDKQSTTS TSTDEHVIPP TAGSACDAAA TGGDAGNEVH PPTVVEDLTP PNIGGRSASA 60 TAAKGKGKVV QGEGAGDEEN ETDVNNAAAE MAPEGESEPI TLNTVLLSGI PSIMRRKLLK 120 GVPSPCVVCQ KAFRSFSALI HHLRTHGEDV FRRITVTYDV RAIAPITELE HNGEAAENKA 180 LTGGNEAVAR NKTLTSDSEE AVPSKTLTGD KEETVRNEIL IGVPAGPSLQ RDNMDLDFDL 240 NLPLPEAQED * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10001825 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10001825 | 0.0 | (Linum usitatissimum) |
Link Out ? help Back to Top | |
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Phytozome | Lus10001825 |