PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lus10001577

Organism

Linum usitatissimum

Taxonomic ID

4006

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum

Family

GRAS

Protein Properties

Length: 707aa MW: 79795.8 Da PI: 5.072

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lus10001577	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	354.1	2.2e-108	328	703	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshlta 98 + lL+ cA+avss+d++ a++lL+++++++s++gd +qRla+yf+++L+arla+++s ++ ++ s +s + +e l+a+ + + +P+ k+s l + Lus10001577 328 RGLLVLCAQAVSSSDFRTANELLKQVRQHSSETGDGTQRLAHYFANGLEARLAGNSSAMAPNFSYSMASVRIsAAEILKAYMTHLNSCPFKKMSILFT 425 6799************************************************9888888887666665444889999*************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I+e + ++++H+iDf+++ G+QWp L+q La Rp+gpp+lRiTgv+ p+ g +e++ee g+rLa++++++gvpfe+n+++++++e++ lee+ Lus10001577 426 NKMIYETAVDAKTLHVIDFGVMFGFQWPILIQLLAMRPGGPPKLRITGVELPQRGfrPTERIEEAGRRLARYCKRFGVPFEYNPIASHNWETIGLEEF 523 *************************************************99*************************9999****** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvErellg 291 ++++gE++aVn+ + ++l++es +++s+r++vL+l+++++P+++v +e + +n++ F++rf eal ++s+lfd++e l ++ +er++ Ere+ g Lus10001577 524 KIRKGEVVAVNCLGRFKNLMEESFDSNSPRNAVLSLIRKMNPDIFVQTETNGAYNAPFFVTRFREALFHFSSLFDMFECVLDGKEeKERMMFEREIYG 621 *************************************************************************999976666******** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 re++n+va+egaer+er et+++W+ r +aGF+ +pl+++ ++++++ ++ + + + v+++ ++++gWk+r ++++S+W Lus10001577 622 REAMNAVAAEGAERVERPETYKQWQVRNVRAGFRGLPLKKELMEKVRSKMKLWYHKDFDVDQDGCWMLQGWKGRIIFATSCW 703 **************************************************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.387	301	684	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.6E-106	328	703	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence Send to blast
MDPNNPEFSI YDLQFSNSFN PPEDLDLAFT FSPGGESFIF SSTDDSPVSD PSPTTSSGWN 60 HPDSSEQRNQ PIHRHRAYSS PEEDDSSSSS DPVTRYISQM LMEENMEDMP YLCYDPLALR 120 ATEMSLYNVI SGQPFDLDVS DYPAPEQGNE NSPVPDPDYY WDTVSNGVGK GSSSFEDMVK 180 NMFSNEDSVL QFNRGLEEAK KFLPSAPNLV LADLGGKNVA DVQKRSRNQE RGMLELEEEP 240 MSRKQSAVSY EEEGELSEMF DKVLLLPEGL TMCAAMDRHN PNYCNDDTTT AGAKPADEKS 300 ANNGGRKKQG KTKAKKNSSN KNETADLRGL LVLCAQAVSS SDFRTANELL KQVRQHSSET 360 GDGTQRLAHY FANGLEARLA GNSSAMAPNF SYSMASVRIS AAEILKAYMT HLNSCPFKKM 420 SILFTNKMIY ETAVDAKTLH VIDFGVMFGF QWPILIQLLA MRPGGPPKLR ITGVELPQRG 480 FRPTERIEEA GRRLARYCKR FGVPFEYNPI ASHNWETIGL EEFKIRKGEV VAVNCLGRFK 540 NLMEESFDSN SPRNAVLSLI RKMNPDIFVQ TETNGAYNAP FFVTRFREAL FHFSSLFDMF 600 ECVLDGKEEK ERMMFEREIY GREAMNAVAA EGAERVERPE TYKQWQVRNV RAGFRGLPLK 660 KELMEKVRSK MKLWYHKDFD VDQDGCWMLQ GWKGRIIFAT SCWVPA*

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence Send to blast

MDPNNPEFSI YDLQFSNSFN PPEDLDLAFT FSPGGESFIF SSTDDSPVSD PSPTTSSGWN  60
HPDSSEQRNQ PIHRHRAYSS PEEDDSSSSS DPVTRYISQM LMEENMEDMP YLCYDPLALR  120
ATEMSLYNVI SGQPFDLDVS DYPAPEQGNE NSPVPDPDYY WDTVSNGVGK GSSSFEDMVK  180
NMFSNEDSVL QFNRGLEEAK KFLPSAPNLV LADLGGKNVA DVQKRSRNQE RGMLELEEEP  240
MSRKQSAVSY EEEGELSEMF DKVLLLPEGL TMCAAMDRHN PNYCNDDTTT AGAKPADEKS  300
ANNGGRKKQG KTKAKKNSSN KNETADLRGL LVLCAQAVSS SDFRTANELL KQVRQHSSET  360
GDGTQRLAHY FANGLEARLA GNSSAMAPNF SYSMASVRIS AAEILKAYMT HLNSCPFKKM  420
SILFTNKMIY ETAVDAKTLH VIDFGVMFGF QWPILIQLLA MRPGGPPKLR ITGVELPQRG  480
FRPTERIEEA GRRLARYCKR FGVPFEYNPI ASHNWETIGL EEFKIRKGEV VAVNCLGRFK  540
NLMEESFDSN SPRNAVLSLI RKMNPDIFVQ TETNGAYNAP FFVTRFREAL FHFSSLFDMF  600
ECVLDGKEEK ERMMFEREIY GREAMNAVAA EGAERVERPE TYKQWQVRNV RAGFRGLPLK  660
KELMEKVRSK MKLWYHKDFD VDQDGCWMLQ GWKGRIIFAT SCWVPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-45	331	703	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lus10001577

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021622937.1	0.0	scarecrow-like protein 33
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A2C9WLN7	0.0	A0A2C9WLN7_MANES; Uncharacterized protein
STRING	Lus10001577	0.0	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-172	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Lus10001577

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]