PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10001520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C3H | ||||||||
Protein Properties | Length: 167aa MW: 17740.9 Da PI: 8.2084 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.2 | 5e-12 | 57 | 79 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f +tG+C+yGd+Ck++H Lus10001520 57 TGLCNRFVKTGFCPYGDSCKYSH 79 679******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.73E-12 | 4 | 46 | No hit | No description |
Pfam | PF06220 | 6.7E-7 | 5 | 39 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 15.366 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-7 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-9 | 57 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.2E-8 | 57 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MPLGKYHCDY CDKEFQDTPV ARKRHLLSSS HLRAKSIWYN SFPPSSAASN APPPPPTGLC 60 NRFVKTGFCP YGDSCKYSHL SSNTATPQNY NSAQDLSVPG LVAAAGSLSS SFQSGPSSVH 120 GTVLASISAT TVMPNSMGGW WGNLPPSLMP PPEGGYRSDL PYLDWG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10001520 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021619842.1 | 3e-48 | zinc finger CCCH domain-containing protein 3 isoform X1 | ||||
TrEMBL | A0A2C9VFA4 | 6e-47 | A0A2C9VFA4_MANES; Uncharacterized protein | ||||
STRING | Lus10001520 | 1e-118 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11959 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 3e-40 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10001520 |