PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10001106 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 197aa MW: 22482.6 Da PI: 7.864 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 39 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF+ +L +H + H Lus10001106 39 WQCGYCKKSFRAETYLDQHFDSmH 62 58*****************77666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.203 | 39 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MPFVEQERYQ IPTNCRLHPS NDLFRDQEQH KINYDFNQWQ CGYCKKSFRA ETYLDQHFDS 60 MHFDLLNFTD IKCLADICGA LHCDSVMDSK SVKKIRCHPA AASKNRHLCE SLADSCFPLN 120 LGRSAARLHD LFLHQFCDAL TCAGKNKLFP KGGKNTGFYF QVNEAHDGGV SYLNLHNMKI 180 TSTSLLFSML TLQRCS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10001106 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011024088.1 | 2e-84 | PREDICTED: uncharacterized protein LOC105125376 | ||||
Refseq | XP_011024089.1 | 2e-84 | PREDICTED: uncharacterized protein LOC105125376 | ||||
TrEMBL | B9IF52 | 4e-82 | B9IF52_POPTR; Uncharacterized protein | ||||
STRING | Lus10001106 | 1e-146 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3216 | 13 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63280.1 | 2e-74 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10001106 |