PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001085
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SRS
Protein Properties Length: 334aa    MW: 37220 Da    PI: 8.916
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001085genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70225.44e-084176540
       DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40
                 + +C +CGn a+  C ++ C+ CC      C+ hv 
  Lus10001085 41 KPKCIQCGNVARSRCPYQSCKSCCSKAQNPCHIHVL 76
                 568*******************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-54376IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MATSSPAPSN IISDAAANPA TPASLQRIDG TTPKTLRGLN KPKCIQCGNV ARSRCPYQSC  60
KSCCSKAQNP CHIHVLKANA TIPDKALPSN IGQVDHQSVD LSPSTTSLRV ASLRQLSNTF  120
SQFNNVHTPR WRKPLTKKEA LAINEWRFKK LKEYRDGIAE KETEAFDRYM QNISLLEETF  180
SMKSMQGNDD ASLVDPTVSE NLRKKKQRVV DEGLRKLEEM ELEGDRRPAK VKQWSDRAST  240
FNDLIEKLNK ARNEDDIKSC LEMKSQLSGS RGPQEAAVLN NEVESQTNKN EQEASSSKAM  300
DWFSQNQLRP VDIDQETVGK INAHFTSLKI ASL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001085
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002528800.11e-120uncharacterized protein LOC8263722
RefseqXP_021660976.11e-120uncharacterized protein LOC110650343
TrEMBLB9SS311e-119B9SS31_RICCO; Uncharacterized protein
STRINGLus100010850.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76901618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.16e-84