PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10001062
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 352aa    MW: 38350.6 Da    PI: 6.6713
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10001062genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29148209159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYGqK++ g+++pr+YYrCt +   gC ++k+v+rs++dp+++eitY+g+H+++
  Lus10001062 148 LDDGFSWRKYGQKDILGAKYPRGYYRCTLRnvqGCLATKQVQRSDQDPSILEITYRGRHTCS 209
                  59**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.158143211IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-28145209IPR003657WRKY domain
SuperFamilySSF1182901.83E-25147210IPR003657WRKY domain
SMARTSM007741.4E-40148210IPR003657WRKY domain
PfamPF031061.3E-26149208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MNTHPRTTAS SDDDDWEQKC SSLAAELASG RDVAKQLQLI LFPPSSHYHD VTREMLVKKI  60
LVSYDNALFL LNQQNPNRMV QIKSEYSPPP PPSMNGSPMS EDSDRDCSPD VNVVNPTTGS  120
TSRKRKSSIP RWTHQVKVRP GMGLEGPLDD GFSWRKYGQK DILGAKYPRG YYRCTLRNVQ  180
GCLATKQVQR SDQDPSILEI TYRGRHTCSA HSSSPPLPST TVADNHDHLL LNFQTGLKVI  240
TDDLELTNNY SSAPLPPSNF ASFFPPPPFT AAGSFFPSPA TSSFVPPPPT SSTVYNHVGL  300
GPAASSSGNS TTTSSAATVG LADHDYPFGN MDLFDSYPTT TYGFDNSGFF S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-191482061474Disease resistance protein RRS1
5w3x_D2e-191482061474Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10001062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001918.13e-84PREDICTED: probable WRKY transcription factor 30
TrEMBLA0A3Q9EE234e-83A0A3Q9EE23_POPTO; WRKY DNA-binding protein 30
STRINGLus100010620.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-43WRKY family protein