PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000965
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 445aa    MW: 49387.2 Da    PI: 8.9566
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000965genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.9e-1369125155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Lus10000965  69 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 125
                  57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-969125IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-1569135IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-1270134IPR001471AP2/ERF domain
PROSITE profilePS5103218.51870133IPR001471AP2/ERF domain
SMARTSM003802.9E-1970139IPR001471AP2/ERF domain
PRINTSPR003673.7E-57182IPR001471AP2/ERF domain
PRINTSPR003673.7E-5115135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MASPSSDPGL KHEVGVGSSS GGGESSEAAV ANDQLLLYRG LKKAKKDRGC TAKERISKMP  60
PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQGAYDDEE AAARAYDLAA  120
LKYWGPGTLI NFPVSDYTRD LEEMQNVSRE EYLASLRRKS SGYSRGISKY RGLSSLLLSF  180
ILSPSTCLWP SQSSRWDLSI GRMAGPGYFS NVNYGDEPEN QYMGSFCIER KIDLTSHIKW  240
WATNKSRQVE SVSRPSDEPR HSSGEEINRE LRTLEWAVQP TEPFQMPRLG VSSCEGKKKH  300
KVSALSILSQ SMAYKSLQEK ASTRKEINNT ENDENENKMA VNKTLVDYAG KSVEQSTSHD  360
DDNINRLGIT GMNASAALSI QRNMYPLTSF LTAPPLVNNY NIGSLADPLR WSTLVPALPP  420
GMSSSSEVTK TEASSTYTLF QPEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000965
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421325.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-146AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2H5QJI40.0A0A2H5QJI4_CITUN; Uncharacterized protein
STRINGLus100009650.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60072936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-134AP2 family protein