PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10000864 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NF-YB | ||||||||
Protein Properties | Length: 172aa MW: 19309.9 Da PI: 4.6249 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 64.9 | 1.6e-20 | 35 | 109 | 11 | 85 |
NF-YB 11 anvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 + +++i+k++lP + ++++d+++++ ec +efi +++se+++ c +e+++ti+++ +l al lGf +y+e++ + Lus10000864 35 TTMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCSKEDKRTIAPEHVLKALEVLGFGEYIEEVYT 109 56899*****************************************************************99854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.1E-33 | 35 | 154 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-17 | 35 | 95 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.84E-30 | 36 | 156 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MPPPPTPPQL PIPLDRYSQR PTSSRSSDPD HPRLTTMTKI IKEMLPPDVR VARDTQDLLI 60 ECCVEFINLI SSESNEVCSK EDKRTIAPEH VLKALEVLGF GEYIEEVYTA YEQHKLETMQ 120 DTLKVGKWSG TVMTEEEAAA EQQRMFAEAR ARMNGGVPAP KQPEDDRSLQ S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 9e-31 | 22 | 150 | 5 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10000864 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021613631.1 | 3e-84 | protein Dr1 homolog isoform X1 | ||||
Refseq | XP_021647608.1 | 5e-84 | protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 1e-77 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A067J8H8 | 2e-82 | A0A067J8H8_JATCU; Uncharacterized protein | ||||
STRING | Lus10000864 | 1e-124 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 2e-80 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Lus10000864 |
Publications ? help Back to Top | |||
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