PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10000782 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | LSD | ||||||||
Protein Properties | Length: 135aa MW: 14444.6 Da PI: 8.3306 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 44.1 | 3.3e-14 | 8 | 32 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rG ++VRC++C+tV Lus10000782 8 CGGCRTLLMYTRGTTNVRCSCCHTV 32 ************************9 PP | |||||||
2 | zf-LSD1 | 51 | 2.3e-16 | 46 | 70 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C++V Lus10000782 46 CGNCRTTLMYPYGAPSVKCAVCHFV 70 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.8E-16 | 5 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.3E-12 | 8 | 32 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.90.10.10 | 4.1E-4 | 8 | 76 | No hit | No description |
TIGRFAMs | TIGR01053 | 3.7E-13 | 43 | 73 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.8E-15 | 46 | 70 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MDMSQFICGG CRTLLMYTRG TTNVRCSCCH TVNLAPVSNQ VAHINCGNCR TTLMYPYGAP 60 SVKCAVCHFV TNVTISNVRV QQRPNDQGAM VPSTSPAMPQ SQTQTVVVEN PMSVDESGKL 120 VSNVVVGVTT TDRK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10000782 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075549.1 | 2e-71 | protein LSD1 isoform X1 | ||||
Swissprot | Q2QMB3 | 1e-52 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A067KSR6 | 4e-70 | A0A067KSR6_JATCU; Uncharacterized protein | ||||
STRING | Lus10000782 | 1e-93 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4027 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 2e-52 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10000782 |
Publications ? help Back to Top | |||
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