PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000747
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family B3
Protein Properties Length: 366aa    MW: 41553.9 Da    PI: 9.6715
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000747genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.2e-161482261296
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  + + l +p +f+++h+++   +k+l l++++g+   v +  r+++g++++t GW +Fv++n+L+egD++ F+++g+++   +v v
  Lus10000747 148 A-KELKIPDPFVSQHSQI--IPKKLALMTRKGNPVVVSV-ERRSKGQCFFTLGWTHFVEENNLEEGDIIFFYFHGDRTL--NVVV 226
                  3.4599*********766..7789***************.4777777*************************9875544..5554 PP
2B332.21.9e-10268347385
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                  k++ +s+    +  ++p +fae+ g+k  +     ++d++g+ W + ++  + ++++  +++ W+eFv+ ng+++gD + F+++
  Lus10000747 268 KTFFKSYQKYYQ--YMPLEFAETVGLKAGG--NALFKDPKGKIWIIGVTDgDTTGRQKRFGSSWNEFVRKNGIEDGDKLSFSFK 347
                  666666666665..89********999665..6999************77777777799**********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-17135228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-19135229IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.505136230IPR003340B3 DNA binding domain
CDDcd100171.22E-10137228No hitNo description
SMARTSM010194.7E-7139230IPR003340B3 DNA binding domain
PfamPF023629.9E-15148226IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293264361IPR003340B3 DNA binding domain
SuperFamilySSF1019361.28E-12264350IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-12265347IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-4267361IPR003340B3 DNA binding domain
CDDcd100171.59E-7267359No hitNo description
PfamPF023621.6E-7268347IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEKQQLPETP SFVKIFHGGF AKELVSGNQT LNFPLPPYKT HFPTLFFNPP SFFLQKIPDP  60
FLNQHGQILS SESSDPRNGN PVVVSVERKI RDECFFTLGW AHFVEETGII MHIHVFNFSK  120
DLVVIKKEET MEIHEHPSFV KVFHGGLAKE LKIPDPFVSQ HSQIIPKKLA LMTRKGNPVV  180
VSVERRSKGQ CFFTLGWTHF VEENNLEEGD IIFFYFHGDR TLNVVVYDLL GCLKGVKLTG  240
HRSAEPRTVA KRVKRAATAA NEKLFEFKTF FKSYQKYYQY MPLEFAETVG LKAGGNALFK  300
DPKGKIWIIG VTDGDTTGRQ KRFGSSWNEF VRKNGIEDGD KLSFSFKPSL GFIEVKISKG  360
VILID*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000747
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100007470.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.14e-10B3 family protein