PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10000746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | B3 | ||||||||
Protein Properties | Length: 130aa MW: 14712.8 Da PI: 6.2298 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.6 | 2.3e-18 | 15 | 100 | 10 | 99 |
HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +l+ g++++p +f+e+h + +k tl+ sg++Wev+l +++++g+++l++GW +F+k + L++gD++vF l+++ f +v+vf+ Lus10000746 15 MLQDGIIYIPTEFVERHreRL---VGKFATLKVASGETWEVEL-VNGGDGKIWLANGWGKFAKHQSLNQGDVLVFGLEQDCYF--HVMVFDP 100 5667899**********6433...356899*************.7999999**************************999999..9999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.1E-22 | 3 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.16E-22 | 3 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.03E-19 | 5 | 99 | No hit | No description |
PROSITE profile | PS50863 | 13.465 | 6 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-13 | 7 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-14 | 15 | 99 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MNNKPHFFRV MLHFMLQDGI IYIPTEFVER HRERLVGKFA TLKVASGETW EVELVNGGDG 60 KIWLANGWGK FAKHQSLNQG DVLVFGLEQD CYFHVMVFDP NTVSERIKCS SHDQVEVEEG 120 FVVGKVTGL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10000746 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10000746 | 1e-91 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 3e-11 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10000746 |