PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000705
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 178aa    MW: 19883.4 Da    PI: 8.6679
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000705genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-052547123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C k Fs+   L  H+++H
  Lus10000705 25 YVCNFCRKDFSSAQALGGHMNVH 47
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-62251No hitNo description
Gene3DG3DSA:3.30.160.602.8E-42547IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.992552IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEKTCRTRTK SRDHHHPPHA HRSRYVCNFC RKDFSSAQAL GGHMNVHRLD RARLLLIGPS  60
SSSSSSSSSS PSHLSPPSDS LHGITEHDDK EQYRRRRPST LMASPYPTNL QLTTFFPSHR  120
ESVLLMASHK LKMELAEDQD QDQQDQVVRL ELGMEGAAAA PKPALDLELR LGCFTSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19297YRRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000705
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100007051e-127(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.15e-12zinc-finger protein 10