PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000679
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 503aa    MW: 55595.1 Da    PI: 5.9897
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000679genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00076398420123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp+C k+F++   L  H r+H
  Lus10000679 398 HECPICLKVFPSGQALGGHKRSH 420
                  79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.51E-51440No hitNo description
PfamPF139122.2E-51639IPR007087Zinc finger, C2H2
SMARTSM003550.321638IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.0371638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SMARTSM003551579103IPR015880Zinc finger, C2H2-like
PfamPF139121.0E-11294318IPR007087Zinc finger, C2H2
SMARTSM003550.066294316IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.741294321IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-6294316No hitNo description
PROSITE patternPS000280296316IPR007087Zinc finger, C2H2
SuperFamilySSF576672.23E-6393420No hitNo description
PfamPF139124.9E-13398420IPR007087Zinc finger, C2H2
SMARTSM003550.071398420IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995398420IPR007087Zinc finger, C2H2
PROSITE patternPS000280400420IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MEEDYQLQQQ QQKMKHVCKF CRKSFPCGRS LGGHMRSHMI NDVSAQTDGT LITRKKLPSL  60
ILTANAENAS ASAQIIVEKL CKECGKGGFQ SWKALFDHMK FHHSSFDQKA KEEDEMEDDE  120
DEDEDEDSWE NSGSNMKQKM VIMDSSQSDN EIMTGMTMPN RKKRSMNKRR SAANSSSFSA  180
VSGVEEQEQE EVALCLMLLS RDVTNWGSNS AHKDHNGPFA AAESSDNNYV LSESPPNRLD  240
QEELVKGTIV VVMKSEISVS ENPRKSGDVV KRKRKLKECE DQSLEVCKDG NIKFECNTCN  300
KSFHSYQALG GHRASHKKTK GYSASILDET NNAEEEEQEE EETDQKMIMM KSVNNEILDQ  360
NKSPTPPSPP AAAAAAIAAN RNVASGSVGR KRDVNRSHEC PICLKVFPSG QALGGHKRSH  420
LVATNNSKVA VLPTAEVVVP AAEAAKIPVI KDFLDLNLPA PVDEESTNNN NSSINVGFNQ  480
WWAGNSHKHE QQQPLVGLIS NL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000679
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080350.11e-111zinc finger protein ZAT4
TrEMBLA0A067K5C61e-110A0A067K5C6_JATCU; Uncharacterized protein
STRINGLus100006790.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.18e-16C2H2 family protein