PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000540
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 496aa    MW: 56164.1 Da    PI: 6.5192
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000540genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.7e-11108150447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      W ++++ ll+++++++G+g+W+ +a+++g +++   c+++++++
      Lus10000540 108 WNADDEILLLEGIEMYGMGNWTEVAEHVG-TKSKDTCIEHYNNV 150
                      *****************************.************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250245.3E-13435495IPR016827Transcriptional adaptor 2
PROSITE profilePS5013511.1054491IPR000433Zinc finger, ZZ-type
SMARTSM002917.4E-124489IPR000433Zinc finger, ZZ-type
PfamPF005691.1E-94788IPR000433Zinc finger, ZZ-type
SuperFamilySSF578501.0E-1448110No hitNo description
CDDcd023352.92E-264896No hitNo description
PROSITE patternPS0135705077IPR000433Zinc finger, ZZ-type
SuperFamilySSF466892.11E-12101155IPR009057Homeodomain-like
PROSITE profilePS5129320.695103155IPR017884SANT domain
SMARTSM007172.1E-10104153IPR001005SANT/Myb domain
PfamPF002493.1E-11107150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-7108150IPR009057Homeodomain-like
CDDcd001671.42E-10108150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0016573Biological Processhistone acetylation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MGRSRGNFHS VDEDPTQRSR RKKNASTGEN LESSSTGQVT GEGKRALYHC NYCNKDITGK  60
IRIKCAMCPD FDLCIECFSV GAEMTPHKSS HPYRVMDNLS FPLICPDWNA DDEILLLEGI  120
EMYGMGNWTE VAEHVGTKSK DTCIEHYNNV YMNSPYFPLP DMSHVVGKNR KELLAMAKGS  180
SMHGEHNLKE ESPFSPTRVK TEGGYSGRLL SPLNAGDFSI YEATDVESGG RPTSATTAGK  240
KTSGMARVKD SPNNVKVEDP PIERSSKGKK PNCAADGPSL VDLSGYNSKR REFDPEYDND  300
AEQLLAEMEF KDNDTEEERE LKLRVLRIYG KRLDERKRRK DFILERNLLY PNPFERDLSP  360
DERIICRRYD IFMRFHSKEE HEELLRTVIT EHRTLKKIQE LKEARTAGCR TSIEADRYLE  420
LKRKREAEES SRRVKEGSQG GMASEPIGKD SNARPAGQGS SSYVNDLDIT AFFDTQLLSE  480
AEKRLCFEIR LPPPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C9e-40481635120Transcriptional adapter 2
6cw3_E9e-40481635120Transcriptional adapter 2
6cw3_G9e-40481635120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335340RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022720722.10.0transcriptional adapter ADA2b-like isoform X2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A1Q3AVT00.0A0A1Q3AVT0_CEPFO; Transcriptional adapter
STRINGLus100005400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15371726
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]