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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lus10000539 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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| Family |
GRAS |
| Protein Properties |
Length: 544aa MW: 61377.4 Da PI: 5.9871 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lus10000539 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 395.7 | 5e-121 | 172 | 543 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98
l+++L+ cA+a++ d ++a l+ l++++s g+p+qR+ ay++e+L+arl s+s++y+al++ + ss+ ++++ ++++++P+ kf+++ a
Lus10000539 172 LKQVLIGCAQAIDMVDISKAAGLMHVLEQMVSVCGEPIQRVGAYLLEGLRARLELSGSRIYRALKCDSPV---SSDLMTYMGILYQICPYWKFAYMSA 266
5799**************************************************************9998...89999999***************** PP
GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
N I eav+ e r+HiiDf+i qG QW++L+q+La+Rp+g+p +RiTgv++++s + l+ +gerL+k+A+e++v fef+ +a +++ e+L
Lus10000539 267 NVVIHEAVQYEPRIHIIDFQIAQGSQWIPLIQSLAQRPGGAPIIRITGVDDSQSAhaRGGGLHIVGERLSKVAAECNVVFEFHD-TAMVGCEIQREHL 363
***************************************************9988889999***********************.8889999****** PP
GRAS 195 rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
+v+p +Ea++Vn+ ++lh+++desv++ ++rd++L+lvkslsP++v++veqe+++n+++F rf+e+leyy+a+f+s+++ pr++++ri+ E+++++
Lus10000539 364 KVEPlREAVVVNFPYALHHMPDESVDTWNHRDRLLRLVKSLSPRIVTLVEQESNTNTTPFHLRFVETLEYYTAMFESIDVARPRDDKQRISAEQHCVA 461
************************************************************************************************** PP
GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
r+ivnv+acegaer+erhe l+kWr+r+++aGF+++p+s+++++ ++ +l+ ++ + yrvee++g+l+l+W +r++ + SaWr
Lus10000539 462 RDIVNVIACEGAERVERHEVLGKWRSRFQMAGFSQYPFSSSVTAAVRDVLKDYDTR-YRVEERDGALYLYWLRRAMGTSSAWR 543
******************************************************77.*************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 544 aa
Download sequence Send
to blast |
MTQSQKHRNS PTMHGFYHQP IKEEDTYCLS QIELLDNNNM FSIVGSQGEA PSISFQNYKD 60
EYFTLESSST TTTTGFLYDS PAPSVSSCSR SPFSPQGSHS CLTDPHHSPD GSPASRSPYA 120
TDSGNVLWQK LREMEMSLLG PETENFCFSN ESHSLERLDA DQIAEMIPRL DLKQVLIGCA 180
QAIDMVDISK AAGLMHVLEQ MVSVCGEPIQ RVGAYLLEGL RARLELSGSR IYRALKCDSP 240
VSSDLMTYMG ILYQICPYWK FAYMSANVVI HEAVQYEPRI HIIDFQIAQG SQWIPLIQSL 300
AQRPGGAPII RITGVDDSQS AHARGGGLHI VGERLSKVAA ECNVVFEFHD TAMVGCEIQR 360
EHLKVEPLRE AVVVNFPYAL HHMPDESVDT WNHRDRLLRL VKSLSPRIVT LVEQESNTNT 420
TPFHLRFVET LEYYTAMFES IDVARPRDDK QRISAEQHCV ARDIVNVIAC EGAERVERHE 480
VLGKWRSRFQ MAGFSQYPFS SSVTAAVRDV LKDYDTRYRV EERDGALYLY WLRRAMGTSS 540
AWR*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
