PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10000532 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | GRAS | ||||||||
Protein Properties | Length: 201aa MW: 23344.2 Da PI: 5.4324 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 119.2 | 5.1e-37 | 1 | 196 | 172 | 374 |
GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFlerflealeyysa 266 +++++++n l ++l++l+++ ++ +++E+l+V+ +++lh+l ++ ++er+e+L++++sl+Pk v+++e+++d++ + ++ +f++ +ey + Lus10000532 1 MNINLQINRLDNRSLQNLNTQVINKDREETLVVCAQFRLHHLN---HNNPDERSEFLRVLRSLEPKGVILSENNMDCSCNgcvDYSSGFTRRVEYLWR 95 79*******9999*****************************8...55566667********************8883333459************** PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363 ++ds+++ + + r + Er++++ e+ ++++++g++ +e++e+W er++ +GF+ + e+a ++a++llrk++ ++++rvee++g + l Wk Lus10000532 96 FLDSTSSAF----KGRESEERRMMEGEAAKALTNSGEM----NERKEQWCERMRGVGFSGEGFCEDAIDEARALLRKHDnNWEMRVEEKDGFVGLWWK 185 *****7775....66666667777777999******99....88888********************************9999*************** PP GRAS 364 drpLvsvSaWr 374 ++p+ ++S W+ Lus10000532 186 GQPVSFCSLWK 196 **********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 15.585 | 1 | 175 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-34 | 1 | 196 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MNINLQINRL DNRSLQNLNT QVINKDREET LVVCAQFRLH HLNHNNPDER SEFLRVLRSL 60 EPKGVILSEN NMDCSCNGCV DYSSGFTRRV EYLWRFLDST SSAFKGRESE ERRMMEGEAA 120 KALTNSGEMN ERKEQWCERM RGVGFSGEGF CEDAIDEARA LLRKHDNNWE MRVEEKDGFV 180 GLWWKGQPVS FCSLWKLQAE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10000532 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021294785.1 | 1e-116 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 1e-105 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A061GJK7 | 1e-114 | A0A061GJK7_THECC; Nodulation-signaling pathway 1 protein, putative | ||||
STRING | Lus10000532 | 1e-146 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6874 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 3e-66 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10000532 |
Publications ? help Back to Top | |||
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