PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000463
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 382aa    MW: 40919.1 Da    PI: 6.8285
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000463genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.11.9e-3528126289
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaesssssasnsssg...... 88 
                  +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++a+ +i++l+++     +   a+  e  + + +++n++++      
  Lus10000463  28 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAQSSIDKLAQLppwhpP---ANTNEGLELEMEQENEEEQsaavta 122
                  79**************************************************************874441...3222222222222222222111222 PP

          TCP  89 ...k 89 
                      
  Lus10000463 123 esdY 126
                  2221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3128118IPR005333Transcription factor, TCP
PROSITE profilePS5136932.0813088IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGKRSGGRGG GGEGEIIQVQ GGHIVRSTGR KDRHSKVYTA KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AQSSIDKLAQ LPPWHPPANT NEGLELEMEQ ENEEEQSAAV  120
TAESDYSSSF HLQNSGGGGG SGNHPTASFL HPDGIADTMK SFFPTSSSTN LSMNFQSYPP  180
DLISRSSANQ SQDLGLSLHS FVDHPQSGHD GGNHHQGLFQ AGSGGPVGYE TNFHDWSNET  240
STENRGGAFG FSNHNPNQLA AAAAQHAMMA QDGSSTAFAA SSSSSQRGPL QSNGFFGRAW  300
NDVVPMGTEN HHNHQHHNQQ HQRAYEFHQS VLFGSRFLGS SDGIHNQGFR IPARIHGGEQ  360
DGGCGDRAGS SSSPGGRSAE H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-233588154Putative transcription factor PCF6
5zkt_B6e-233588154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1511GGRGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000463
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021665254.11e-110transcription factor TCP4-like
RefseqXP_021665255.11e-110transcription factor TCP4-like
RefseqXP_021665256.11e-110transcription factor TCP4-like
RefseqXP_021665257.11e-110transcription factor TCP4-like
RefseqXP_021665258.11e-110transcription factor TCP4-like
RefseqXP_021665259.11e-110transcription factor TCP4-like
RefseqXP_021665260.11e-110transcription factor TCP4-like
TrEMBLA0A2C9UT111e-106A0A2C9UT11_MANES; Uncharacterized protein
STRINGLus100004630.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-52TCP family protein