PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10000400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 79aa MW: 9106.72 Da PI: 10.4679 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 23.4 | 7.9e-08 | 3 | 30 | 12 | 39 |
HHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevavii 39 ++ kR+ ++KK +ELS+L ++++ i+ Lus10000400 3 SLKKRKSRLMKKVKELSTLKAIQAYTIV 30 789********************98887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00319 | 3.0E-6 | 2 | 33 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-7 | 3 | 46 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 79 aa Download sequence Send to blast |
MASLKKRKSR LMKKVKELST LKAIQAYTIV NNRYDEAQPS ETWTPMLDGV HYVLDGVHYV 60 LPRIKNMPKM DQNKNMVN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10000400 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ886299 | 7e-44 | HQ886299.1 Linum usitatissimum clone GMU2AYZ01BMX4G microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
STRING | Lus10000400 | 2e-51 | (Linum usitatissimum) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10000400 |