PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000173
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 322aa    MW: 36225.2 Da    PI: 9.0984
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000173genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72e-3281137259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgy+WrKYGqK+vkgse prsYY+Ct+ +Cpv+kkvers  +++v+ei+Y+g+Hnh+
  Lus10000173  81 DDGYKWRKYGQKQVKGSELPRSYYKCTHLKCPVTKKVERSL-EGQVTEIIYKGQHNHH 137
                  8****************************************.***************7 PP
2WRKY107.75.5e-34227285159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Lus10000173 227 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERAATDPKAVITTYEGKHNHD 285
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-2875139IPR003657WRKY domain
SuperFamilySSF1182902.75E-2578139IPR003657WRKY domain
SMARTSM007747.6E-3580138IPR003657WRKY domain
PROSITE profilePS5081122.21781139IPR003657WRKY domain
PfamPF031069.8E-2581137IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.5E-38212287IPR003657WRKY domain
SuperFamilySSF1182903.53E-30219287IPR003657WRKY domain
PROSITE profilePS5081138.928222287IPR003657WRKY domain
SMARTSM007741.1E-39227286IPR003657WRKY domain
PfamPF031061.8E-26228285IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MFMDPPAISP ATLLESPEFR MFYPQESYGM SNQQALALVP ASALPHHETT KDNYSKSTKM  60
ETYPDQGYQS SSFIVVDKPA DDGYKWRKYG QKQVKGSELP RSYYKCTHLK CPVTKKVERS  120
LEGQVTEIIY KGQHNHHPPQ SNKRGKDQGN NVELGSQFRD SKESSQATAD RLSASSDSDA  180
ETANYEAEEP DAKRRNIEVR VTDSTSSHRT VTEPRIIVQT TSEVDLLDDG YRWRKYGQKV  240
VKGNPYPRSY YKCTTQGCNV RKHVERAATD PKAVITTYEG KHNHDVPASK NSSHSSTANS  300
SLDKLSTQQP VVQLRLKERI A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-4481288878Probable WRKY transcription factor 4
2lex_A2e-4481288878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000173
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021685222.11e-137probable WRKY transcription factor 3
SwissprotQ9ZQ701e-123WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A067H6661e-133A0A067H666_CITSI; Uncharacterized protein
TrEMBLA0A140H8N01e-133A0A140H8N0_MANES; WRKY transcription factor 26
TrEMBLA0A2C9VWJ71e-133A0A2C9VWJ7_MANES; Uncharacterized protein
STRINGLus100001730.0(Linum usitatissimum)
STRINGLus100368000.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-116WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]