PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10000140
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 451aa    MW: 50381.1 Da    PI: 7.9387
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10000140genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS133.42.5e-412214451218
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPilkfs 94 
                  l +lLl++Ae v  ++  +a++lL+r + +as + ++ qR++++f+eAL++r+ r  ++ +++   p ++ ++     s +  a   +++  P+ ++ 
  Lus10000140 221 LAHLLLAAAEKVGFHQYDRASKLLTRCEWIASDRSNAAQRIVHCFAEALRERIDRgLGKFIVRMPDPFPSFNSMynnGSGTNLASICLHQKAPFSQVM 318
                  579****************************************************666666655544433322223355555555669********** PP

         GRAS  95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rle 187
                  ++t+ q I e + ++ +++H iD++i  G+ W aL+qaLa+R        +lR+T++++ +  ++  +e tg+rL++fA++++ pf+f+v++ +  l+
  Lus10000140 319 QMTTVQSIIENIGTSaRKLHCIDLEIRSGVIWTALMQALANRGadcVMVEHLRVTAIARIS--ERYHVEDTGRRLESFARSMNFPFSFHVVYINtCLS 414
                  ************9997899***********************95444588*********55..999*************************666599* PP

         GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesv 218
                  d++ + +rv  +E+++V + + l +ll ++ 
  Lus10000140 415 DIREDVFRVAFDETVVVVCTFILRTLLGRPE 445
                  **********************999987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098525.206195450IPR005202Transcription factor GRAS
PfamPF035148.6E-39221445IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MVPVDNQDHS EINRPGGCLN QQGKNMFSME ELGQVYPLKP AARSTESVTK GLQLFNDKSS  60
KLRPQSEPSS NNNKGMSFED YLVSCFPAPA AAQPMHEIKR LENITNNRNT STSTNSNNNG  120
SLSASLELLN SYGSGFRKLV NNNNNTINNQ SANMSTAVKP GAEANKYTRK LSTEAVMRVA  180
GERYIQFSEQ HRCDDFSMLM HPFGYALSAG LSEEETKDVE LAHLLLAAAE KVGFHQYDRA  240
SKLLTRCEWI ASDRSNAAQR IVHCFAEALR ERIDRGLGKF IVRMPDPFPS FNSMYNNGSG  300
TNLASICLHQ KAPFSQVMQM TTVQSIIENI GTSARKLHCI DLEIRSGVIW TALMQALANR  360
GADCVMVEHL RVTAIARISE RYHVEDTGRR LESFARSMNF PFSFHVVYIN TCLSDIREDV  420
FRVAFDETVV VVCTFILRTL LGRPERLEVK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10000140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538341.11e-127DELLA protein RGL1
TrEMBLA0A2K2BLG61e-123A0A2K2BLG6_POPTR; Uncharacterized protein
TrEMBLB9RND91e-122B9RND9_RICCO; DELLA protein RGL2, putative
STRINGLus100001400.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-16RGA-like protein 3