PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10000130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | C2H2 | ||||||||
Protein Properties | Length: 197aa MW: 21977.1 Da PI: 9.4284 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.00011 | 36 | 57 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C++ ++++ +L Hi+ H Lus10000130 36 CSVCHRAYPTSRLLSMHISEaH 57 ******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 88 | 8 | 32 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 6.1 | 34 | 57 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 36 | 57 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.046 | 72 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 74 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MDEDAEVMFC PIVGCRAPLS TMGFENHYIS QHTAACSVCH RAYPTSRLLS MHISEAHDSF 60 FQAKVARGYP MYECLVEGCG LKFKSYKGRQ KHLVDKHKFP ASYDFFKKGH HLSKKARGKI 120 HCKKTTATRK NDEEGSSKMD ADEEEEVENL TSALSKMTTG STPKSVSFGR GNARGLTFVP 180 RSVQRDVKKP DPTPRP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10000130 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017628544.1 | 7e-82 | PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 511 | ||||
TrEMBL | A0A2P5YLN0 | 8e-80 | A0A2P5YLN0_GOSBA; Uncharacterized protein | ||||
STRING | Lus10000130 | 1e-145 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9718 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14140.1 | 6e-72 | zinc ion binding;nucleic acid binding;zinc ion binding |
Link Out ? help Back to Top | |
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Phytozome | Lus10000130 |