PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa019433 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | TCP | ||||||||||||
Protein Properties | Length: 560aa MW: 62014.6 Da PI: 6.4175 | ||||||||||||
Description | TCP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 113.7 | 2.5e-35 | 202 | 310 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec....eaesssssasnsss 87 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ +++++s + e ++ ++ns++ Lsa019433 202 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELpawkptattaTTTPNSTSiadfE---QNPDQQNSNH 298 79**************************************************************88777666653333322222221...1111111111 PP TCP 88 g..........k 89 + + Lsa019433 299 HqlshfeqhpdD 310 122223322220 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.0E-34 | 202 | 308 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.295 | 204 | 262 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MEFDLELSVN GGVRVEXVEF DYVFSFFMLI LKKLEQEEVV HHRKGVILDP QRNHHHLHLY 60 QQLLNSRQEE KEEDQEIQIG FHGIPSKSSS VFNKIDEIPP PDNXFLHGGL GGPARQPPRP 120 QKKRPYLPSS VDQLTQEGEE YAPRLPEKMG ESYQYHNQQL QQQQQQQQQQ ASGSSRLGLR 180 GAGGGGGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR RVRLSAHTAI QFYDVQDRLG 240 YDRPSKAVDW LIKKAKAAID ELAELPAWKP TATTATTTPN STSIADFEQN PDQQNSNHHQ 300 LSHFEQHPDD SIVDNQMGNS QNSSFLPPSL DSDSIADTIK SFFPMGASTN PGNNTSSGMQ 360 FHQSFPPQDL LSRTSSRSQD LRLSLQSFQD PILQNHHHHH QQNEQGNNNN SNIFFDGSGW 420 SDNQPGGFQR MVAWGGVGGG DAVSAGFVFS SQPSPSTPFL QPLFGQTTNN QLFNNSQRGP 480 LQSSNAPSFR AWIDPPPPFT GVAIDQHPTL AFHHPSSMSG FASGLGGFSG FRIPARIQGE 540 EEEHDGISDK PSSASSDSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 209 | 262 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 209 | 262 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023771332.1 | 0.0 | transcription factor TCP4-like isoform X1 | ||||
Swissprot | Q8LPR5 | 1e-97 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A103XLV2 | 0.0 | A0A103XLV2_CYNCS; Transcription factor, TCP (Fragment) | ||||
STRING | XP_009604314.1 | 1e-128 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-46 | TCP family protein |