PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa019358

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

GRAS

Protein Properties

Length: 615aa MW: 68695 Da PI: 6.2136

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58696420	PU_unref	Unigene	View CDS
PUT-187a-Lactuca_sativa-27656	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	386.4	3.3e-118	219	598	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lLl+c ea+ ++ +++++++++l elasp+g +++ Rlaay+teALa r++r +++++++ p+e + + ++e+ +al+l+++++Pi+kf h+t N Lsa019358 219 LISLLLACLEAIGVKNIAAINHFISKLGELASPRGdSSISRLAAYYTEALALRVSRIWPNIFQISIPREIN-QVEEENGTALRLLNQATPIPKFIHFTSN 317 5799*****************************7799*******************999999997.678888999*************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199 + +l++++g+++vH+iDfd++qGlQWp+++q+Las +++p ++RiTgvg+ sk+ l etg rL+ fAe+l+++fef++ v++rled++l++L+vk+g Lsa019358 318 EILLRSFQGKDKVHVIDFDVKQGLQWPSFFQSLASMNNPPSHVRITGVGE----SKQDLIETGARLSGFAEALNLEFEFHP-VVDRLEDVRLWMLHVKEG 412 **********************************************....9**********************.7************* PP GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299 E++aVn+vlqlh++l + + + +++ +l++s++P vvv++eqe++hn++ + +r++++l+yysa+fd++++ +p +s+ rik+E+ +grei+n++a Lsa019358 413 ETVAVNCVLQLHKMLYDATGGA--LRDFFRLIRSTNPSVVVMAEQESEHNDAVLEKRVSNSLKYYSAIFDCIDSVFPLQSHSRIKIEES-FGREIRNIIA 509 ***********6554444..589**********************************************************.****** PP GRAS 300 cegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk.sdg...yrveee..........sgslvlgWkdrpLvsvSaW 373 ceg er+erh + +W + + e GF++v++se++ q +++l++++ g ++ve++ + ++l W+d+pL++vSaW Lsa019358 510 CEGLERFERHVGFDQWWRSMAElGGFRSVEISEREFLQSQMILKMYDhPFGpnsFKVEKQqqrrvsdggaTAGVTLSWSDQPLYTVSAW 598 ***********8776666389****************9965456669977788899888677788************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.665	193	565	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.1E-115	219	598	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 615 aa Download sequence Send to blast
MLAGCSSSTF SNFPSMSTQR LDLPCNTNFP RKESTRSQPV IRPVGPISLD NNNNNNNTIE 60 ARTTNCSLKH TVVEKKNDIW DNRNKGLKRL YQDEQDESFR AKRKRGCSKV EEFGENEDNF 120 WFSKQGFVLD HSATSLPWSF VNELADLGER GVSSGSHRQR VVNETSSGSG SGSRSSSPES 180 HRSLDVGGTN GVGAPNPNQS LDLLAIGNTN HDEEVGFELI SLLLACLEAI GVKNIAAINH 240 FISKLGELAS PRGDSSISRL AAYYTEALAL RVSRIWPNIF QISIPREINQ VEEENGTALR 300 LLNQATPIPK FIHFTSNEIL LRSFQGKDKV HVIDFDVKQG LQWPSFFQSL ASMNNPPSHV 360 RITGVGESKQ DLIETGARLS GFAEALNLEF EFHPVVDRLE DVRLWMLHVK EGETVAVNCV 420 LQLHKMLYDA TGGALRDFFR LIRSTNPSVV VMAEQESEHN DAVLEKRVSN SLKYYSAIFD 480 CIDSVFPLQS HSRIKIEESF GREIRNIIAC EGLERFERHV GFDQWWRSMA ELGGFRSVEI 540 SEREFLQSQM ILKMYDHPFG PNSFKVEKQQ QRRVSDGGAT AGVTLSWSDQ PLYTVSAWVP 600 SDVAGSSSAF QQAAA

Sequence ? help Back to Top

Protein Sequence Length: 615 aa Download sequence Send to blast

MLAGCSSSTF SNFPSMSTQR LDLPCNTNFP RKESTRSQPV IRPVGPISLD NNNNNNNTIE  60
ARTTNCSLKH TVVEKKNDIW DNRNKGLKRL YQDEQDESFR AKRKRGCSKV EEFGENEDNF  120
WFSKQGFVLD HSATSLPWSF VNELADLGER GVSSGSHRQR VVNETSSGSG SGSRSSSPES  180
HRSLDVGGTN GVGAPNPNQS LDLLAIGNTN HDEEVGFELI SLLLACLEAI GVKNIAAINH  240
FISKLGELAS PRGDSSISRL AAYYTEALAL RVSRIWPNIF QISIPREINQ VEEENGTALR  300
LLNQATPIPK FIHFTSNEIL LRSFQGKDKV HVIDFDVKQG LQWPSFFQSL ASMNNPPSHV  360
RITGVGESKQ DLIETGARLS GFAEALNLEF EFHPVVDRLE DVRLWMLHVK EGETVAVNCV  420
LQLHKMLYDA TGGALRDFFR LIRSTNPSVV VMAEQESEHN DAVLEKRVSN SLKYYSAIFD  480
CIDSVFPLQS HSRIKIEESF GREIRNIIAC EGLERFERHV GFDQWWRSMA ELGGFRSVEI  540
SEREFLQSQM ILKMYDHPFG PNSFKVEKQQ QRRVSDGGAT AGVTLSWSDQ PLYTVSAWVP  600
SDVAGSSSAF QQAAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-58	206	600	7	380	Protein SCARECROW
5b3h_A	1e-58	206	600	6	379	Protein SCARECROW
5b3h_D	1e-58	206	600	6	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023752070.1	0.0	scarecrow-like protein 28
Refseq	XP_023752071.1	0.0	scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A2J6M496	0.0	A0A2J6M496_LACSA; Uncharacterized protein
STRING	Gorai.008G243900.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein