PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa019277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | YABBY | ||||||||
Protein Properties | Length: 191aa MW: 21266.6 Da PI: 10.1961 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 193.3 | 1.1e-59 | 26 | 172 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 ss++q+Cyv+C+ C+t+lavsvPstslfk+vtvrCGhCt+ll v+++ +a+++ +v + +++n +++++t + Lsa019277 26 SSADQLCYVHCTRCDTVLAVSVPSTSLFKTVTVRCGHCTNLLPVTMRGLLLPPPAVNQ------------FRVGHFPMNQNIYPNDTSTTA-P------G 106 578****************************************888887777777775............455544444444443333332.2......2 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + ++p++p ++rPPekrqr+Psaynrfikeeiqrika nPdishreafsaaaknWahfP+ihfgl Lsa019277 107 RIFDLPKPPVINRPPEKRQRIPSAYNRFIKEEIQRIKARNPDISHREAFSAAAKNWAHFPHIHFGL 172 3468999999******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.4E-61 | 27 | 172 | IPR006780 | YABBY protein |
CDD | cd01390 | 7.18E-6 | 112 | 162 | No hit | No description |
SuperFamily | SSF47095 | 2.88E-8 | 115 | 165 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.8E-5 | 121 | 166 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MSISSSSTTT ITTLSPPPVL EHIPPSSADQ LCYVHCTRCD TVLAVSVPST SLFKTVTVRC 60 GHCTNLLPVT MRGLLLPPPA VNQFRVGHFP MNQNIYPNDT STTAPGRIFD LPKPPVINRP 120 PEKRQRIPSA YNRFIKEEIQ RIKARNPDIS HREAFSAAAK NWAHFPHIHF GLMGDQTTAV 180 NKSSMRQQIL M |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10457020, PubMed:12417699, PubMed:19837869). Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity (PubMed:10457020, PubMed:12417699). {ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024993668.1 | 7e-90 | axial regulator YABBY 5-like | ||||
Swissprot | Q9XFB1 | 4e-60 | YAB3_ARATH; Axial regulator YABBY 3 | ||||
TrEMBL | A0A2J6LAD9 | 1e-137 | A0A2J6LAD9_LACSA; Uncharacterized protein | ||||
STRING | VIT_02s0154g00070.t01 | 8e-79 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00180.1 | 3e-62 | YABBY family protein |
Publications ? help Back to Top | |||
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