PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa019275
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 165aa    MW: 17402 Da    PI: 10.298
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-11754PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-193973135
       GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
               C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  Lsa019275 39 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 73
               ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-163387IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-133573No hitNo description
Gene3DG3DSA:3.30.50.101.2E-153873IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.07E-123873No hitNo description
PROSITE patternPS0034403964IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.2683969IPR000679Zinc finger, GATA-type
PfamPF003204.6E-173973IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MGDLSDKGSE CDDLMNCKSS PERGGSSSSD GGSHLIKTCA DCGTTKTPLW RGGPAGPKSL  60
CNACGIRSRK KRRALLGMPK EEKKPKKTTM AATSASGDSQ TSGLTTSKGS NMGGDFCLKK  120
RLMALGSEVV LQRPRSRVTK QRRKIGEEEQ AAILLMALSC GSVFA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023747083.11e-113GATA transcription factor 16-like
SwissprotQ9FJ102e-35GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A2J6JLS51e-111A0A2J6JLS5_LACSA; Uncharacterized protein
STRINGXP_009590421.12e-52(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-36GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]